Description Usage Format Source
This data set lists meta2d's analysis results of three circadian transcripts selected from the same source dataset used by cycMouseLiverRNA.
1 |
A dataframe containing 71 columns described as below:
[,1] | CycID | character | transcript name |
[,2] | ARS_pvalue | numeric | pvalue from ARS |
[,3] | ARS_BH.Q | numeric | FDR from ARS |
[,4] | ARS_period | numeric | period from ARS |
[,5] | ARS_adjphase | numeric | adjusted phase from ARS |
[,6] | ARS_amplitude | numeric | amplitude from ARS |
[,7] | JTK_pvalue | numeric | pvalue from JTK |
[,8] | JTK_BH.Q | numeric | FDR from JTK |
[,9] | JTK_period | numeric | period from JTK |
[,10] | JTK_adjphase | numeric | adjusted phase from JTK |
[,11] | JTK_amplitude | numeric | amplitude from JTK |
[,12] | LS_pvalue | numeric | pvalue from LS |
[,13] | LS_BH.Q | numeric | FDR from JTK |
[,14] | LS_period | numeric | period from LS |
[,15] | LS_adjphase | numeric | adjusted phase from LS |
[,16] | LS_amplitude | numeric | amplitude from LS |
[,17] | meta2d_pvalue | numeric | integrated pvalue |
[,18] | meta2d_BH.Q | numeric | FDR based on integrated pvalue |
[,19] | meta2d_period | numeric | averaged period of three methods |
[,20] | meta2d_phase | numeric | integrated phase |
[,21] | meta2d_Base | numeric | baseline value given by meta2d |
[,22] | meta2d_AMP | numeric | amplitude given by meta2d |
[,23] | meta2d_rAMP | numeric | relative amplitude |
[,24:71] | CT18 to CT65 | numeric | sampling time point |
Hughes M. E., et al. (2009). Harmonics of circadian gene transcription in mammals. PLoS Genet, 5(4), e1000442.
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