cycVignettesAMP: cycVignettesAMP

Description Usage Format Source


This data set lists meta2d's analysis results of three circadian transcripts selected from the same source dataset used by cycMouseLiverRNA.




A dataframe containing 71 columns described as below:

[,1] CycID character transcript name
[,2] ARS_pvalue numeric pvalue from ARS
[,3] ARS_BH.Q numeric FDR from ARS
[,4] ARS_period numeric period from ARS
[,5] ARS_adjphase numeric adjusted phase from ARS
[,6] ARS_amplitude numeric amplitude from ARS
[,7] JTK_pvalue numeric pvalue from JTK
[,8] JTK_BH.Q numeric FDR from JTK
[,9] JTK_period numeric period from JTK
[,10] JTK_adjphase numeric adjusted phase from JTK
[,11] JTK_amplitude numeric amplitude from JTK
[,12] LS_pvalue numeric pvalue from LS
[,13] LS_BH.Q numeric FDR from JTK
[,14] LS_period numeric period from LS
[,15] LS_adjphase numeric adjusted phase from LS
[,16] LS_amplitude numeric amplitude from LS
[,17] meta2d_pvalue numeric integrated pvalue
[,18] meta2d_BH.Q numeric FDR based on integrated pvalue
[,19] meta2d_period numeric averaged period of three methods
[,20] meta2d_phase numeric integrated phase
[,21] meta2d_Base numeric baseline value given by meta2d
[,22] meta2d_AMP numeric amplitude given by meta2d
[,23] meta2d_rAMP numeric relative amplitude
[,24:71] CT18 to CT65 numeric sampling time point


Hughes M. E., et al. (2009). Harmonics of circadian gene transcription in mammals. PLoS Genet, 5(4), e1000442.

MetaCycle documentation built on May 2, 2019, 9:14 a.m.