wWater: Data from first and third COVID-19 waves in Trelew...
In MetaEntropy: Functional Shannon Entropy for Virome Mutational Analysis
wWater R Documentation
Data from first and third COVID-19 waves in Trelew http://tools.wmflabs.org/geohack/geohack.php?language=es&pagename=Trelew¶ms=-43.253333333333_N_-65.309444444444_E_type:city
Description
SNVs inferred from Illumina (2 x 150) sequences from pooled ultra-pure virus
concentrates representative of the 1st and 3rd COVID-19 waves in Trelew.
Reads were mapped against the Wuhan-Wu-1 reference genome (MN908947.3) by
bwa, and variants were called with iVar with a 3% frequency
cutoff for minor variants.
First wave cases were caused by ancestral strains whereas third wave cases
were mainly due to highly human-adapted Omicron sublineages.
Usage
wWater
Format
An object of class data.frame with 148 rows and 10 columns.
Source
Manrique, Julieta Marina, and Leandro Roberto Jones. 2025. A
Cost-Effective Wastewater-Based Workflow for Community-Level Insights into
SARS-CoV-2 Evolution. Unpublished 0 (0): 000-000.
MetaEntropy documentation built on March 3, 2026, 5:08 p.m.
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| wWater | R Documentation |
Data from first and third COVID-19 waves in Trelew http://tools.wmflabs.org/geohack/geohack.php?language=es&pagename=Trelew¶ms=-43.253333333333_N_-65.309444444444_E_type:city
Description
SNVs inferred from Illumina (2 x 150) sequences from pooled ultra-pure virus concentrates representative of the 1st and 3rd COVID-19 waves in Trelew. Reads were mapped against the Wuhan-Wu-1 reference genome (MN908947.3) by bwa, and variants were called with iVar with a 3% frequency cutoff for minor variants. First wave cases were caused by ancestral strains whereas third wave cases were mainly due to highly human-adapted Omicron sublineages.
Usage
wWater
Format
An object of class data.frame with 148 rows and 10 columns.
Source
Manrique, Julieta Marina, and Leandro Roberto Jones. 2025. A Cost-Effective Wastewater-Based Workflow for Community-Level Insights into SARS-CoV-2 Evolution. Unpublished 0 (0): 000-000.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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