g_layout: Layout with group

In MetaNet: Network Analysis for Omics Data

Layout with group

Description

Layout with group

Layout with group nicely

Usage

g_layout(
  go,
  group = "module",
  group_order = NULL,
  layout1 = in_circle(),
  zoom1 = 20,
  layout2 = in_circle(),
  zoom2 = 3,
  show_big_layout = FALSE,
  ...
)

g_layout_nice(go, group = "module", mode = "circlepack", ...)

Arguments

go	igraph or metanet
group	group name (default: module)
group_order	group_order
layout1	layout1 method, one of (1) a dataframe or matrix: rowname is group, two columns are X and Y (2) function: layout method for c_net_layout default: in_circle()
zoom1	big network layout size
layout2	one of functions: layout method for c_net_layout, or a list of functions.
zoom2	average sub_network layout size, or numeric vector, or "auto"
show_big_layout	show the big layout to help you adjust.
...	add
mode	circlepack, treemap, backbone, stress

Value

coors

See Also

Other g_layout: g_layout_polygon()

Examples

data("c_net")
module_detect(co_net, method = "cluster_fast_greedy") -> co_net_modu
g_layout(co_net_modu, group = "module", zoom1 = 30, zoom2 = "auto", layout2 = as_line()) -> oridata
plot(co_net_modu, coors = oridata)


data("c_net")
module_detect(co_net, method = "cluster_fast_greedy") -> co_net_modu
if (requireNamespace("ggraph")) {
  plot(co_net_modu, coors = g_layout_nice(co_net_modu, group = "module"))
  plot(co_net_modu, coors = g_layout_nice(co_net_modu, group = "module", mode = "treemap"))
}

MetaNet documentation built on May 29, 2024, 1:21 a.m.