zp_analyse: Zi-Pi calculate

In MetaNet: Network Analysis for Omics Data

Zi-Pi calculate

Description

Zi-Pi calculate

Zi-Pi plot of vertexes

Usage

zp_analyse(go_m, mode = 2, use_origin = TRUE)

zp_plot(go, label = TRUE, mode = 1)

Arguments

go_m	igraph object after module_detect()
mode	plot style, 1~3
use_origin	use original_module, default:TRUE, if FALSE, use module
go	igraph object after zp_analyse()
label	show label or not

Value

igraph

a ggplot object

References

1. Guimerà, R. & Amaral, L. Functional cartography of complex metabolic networks. (2005) doi:10.1038/nature03288.

See Also

Other module: filter_n_module(), get_community(), get_module_eigen(), get_module(), module_detect(), module_eigen(), module_net(), summary_module(), to_module_net()

Examples

data("c_net")
module_detect(co_net) -> co_net_modu
zp_analyse(co_net_modu) -> co_net_modu
if (requireNamespace("ggrepel")) {
  zp_plot(co_net_modu)
  zp_plot(co_net_modu, mode = 3)
}

MetaNet documentation built on May 29, 2024, 1:21 a.m.