Description Usage Arguments Value Examples

This function will plot two figures. The first figure is the Venn diagram to show the overlapped enriched pathways identified by MAPE_G, MAPE_P and MAPE_I. The second figure is the heatmap of the q-values of enriched pathways.

1 |

`MAPE.obj` |
The output of MAPE. |

`cutoff` |
The q-value cutoff. |

`MAPE.method` |
The MAPE method of interest. |

A heatmap of q-values of enriched pathways will be plotted. When plot the heatmap, if the MAPE.method is MAPE_I, it will plot the q-values of enriched pathways for each individual study and q-values computed by three MAPE methods. if the MAPE.method is MAPE_P, it will plot the q-values of enriched pathways for each individual study and q-values computed by the MAPE_P method. if the MAPE.method is MAPE_G, it will plot the q-values of enriched pathways for each individual study and q-values computed by the MAPE_G method.

1 2 3 4 | ```
## Not run:
plot.MAPE(MAPE.obj, cutoff=0.05, MAPE.method = "MAPE_I")
## End(Not run)
``` |

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