print.proto: Print MetaQC results.

In MetaQC: MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis

Description

It prints out the results of all QC measures and standardized mean rank of each study. CQCg and AQCg are combined to be CAQCg, and CQCp and AQCp are combined to be CAQCp to reduce the dominance of CQC and AQC due to their greater correlation.

Usage

## S3 method for class 'proto'
print(x, ...)

Arguments

x	A proto R object which obtained by MetaQC function.
...	Further arguments to print function.

Value

NA

Author(s)

Don Kang ([e-mail]) and George Tseng ([e-mail])

References

Dongwan D. Kang, Etienne Sibille, Naftali Kaminski, and George C. Tseng. (Nucleic Acids Res. 2012) MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis.

See Also

MetaQC

Examples

## Not run: 
    requireAll(c("proto", "foreach"))

   ## Toy Example
    data(brain) #already hugely filtered
    #Two default gmt files are automatically downloaded, 
	#otherwise it is required to locate it correctly.
    #Refer to http://www.broadinstitute.org/gsea/downloads.jsp
    brainQC <- MetaQC(brain, "c2.cp.biocarta.v3.0.symbols.gmt", 
						filterGenes=FALSE, verbose=TRUE)
	#B is recommended to be >= 1e4 in real application					
    runQC(brainQC, B=1e2, fileForCQCp="c2.all.v3.0.symbols.gmt")
    brainQC


## End(Not run)

MetaQC documentation built on May 30, 2017, 2:38 a.m.