MetaSKAT: Meta Analysis for SNP-Set (Sequence) Kernel Association Test

Functions for Meta-analysis Burden test, SKAT and SKAT-O. These methods use summary-level score statistics to carry out gene-based meta-analysis for rare variants.

Install the latest version of this package by entering the following in R:
install.packages("MetaSKAT")
AuthorSeunggeun (Shawn) Lee
Date of publication2015-08-19 21:11:40
MaintainerSeunggeun (Shawn) Lee <leeshawn@umich.edu>
LicenseGPL (>= 2)
Version0.60

View on CRAN

Functions

Files

inst
inst/doc
inst/doc/MetaSKAT.R
inst/doc/MetaSKAT.pdf
inst/doc/MetaSKAT.Rnw
src
src/RFunc.cpp
src/Permutation.cpp
src/Read_BED.h
src/RFunc.h
src/crc32.cpp
src/error_messages.h
src/Permutation.h
src/Read_Dosage.cpp
src/Read_BED.cpp
src/MatFile.cpp
src/Meta.h
src/Meta.cpp
src/Interface_Meta.cpp
src/Read_Dosage.h
src/MatFile.h
NAMESPACE
data
data/Example.rda
data/datalist
R
R/Meta_SSD_Read.R R/Meta_Optimal.R R/Meta_SSD_Write.R R/Meta_SaveData.R R/SSD.R R/Meta_Permutation.R R/Meta_SKAT.R R/Meta_Null_Model.R
vignettes
vignettes/01.SetID
vignettes/03.SetID
vignettes/03.fam
vignettes/02.SetID
vignettes/Example.zip
vignettes/02.bed
vignettes/01.fam
vignettes/03.bim
vignettes/01.bim
vignettes/01.bed
vignettes/02.fam
vignettes/02.bim
vignettes/03.bed
vignettes/MetaSKAT.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/MetaSKAT_wZ.rd
man/Open_MSSD_File_2Read.rd
man/Generate_Meta_Files.rd
man/Example.rd
man/MetaSKAT_MSSD_OneSet.rd
man/Meta_Null_Model.rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.