MetaSKAT: Meta Analysis for SNP-Set (Sequence) Kernel Association Test

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Functions for Meta-analysis Burden test, SKAT and SKAT-O. These methods use summary-level score statistics to carry out gene-based meta-analysis for rare variants.

Author
Seunggeun (Shawn) Lee
Date of publication
2015-08-19 21:11:40
Maintainer
Seunggeun (Shawn) Lee <leeshawn@umich.edu>
License
GPL (>= 2)
Version
0.60

View on CRAN

Files in this package

MetaSKAT
MetaSKAT/inst
MetaSKAT/inst/doc
MetaSKAT/inst/doc/MetaSKAT.R
MetaSKAT/inst/doc/MetaSKAT.pdf
MetaSKAT/inst/doc/MetaSKAT.Rnw
MetaSKAT/src
MetaSKAT/src/RFunc.cpp
MetaSKAT/src/Permutation.cpp
MetaSKAT/src/Read_BED.h
MetaSKAT/src/RFunc.h
MetaSKAT/src/crc32.cpp
MetaSKAT/src/error_messages.h
MetaSKAT/src/Permutation.h
MetaSKAT/src/Read_Dosage.cpp
MetaSKAT/src/Read_BED.cpp
MetaSKAT/src/MatFile.cpp
MetaSKAT/src/Meta.h
MetaSKAT/src/Meta.cpp
MetaSKAT/src/Interface_Meta.cpp
MetaSKAT/src/Read_Dosage.h
MetaSKAT/src/MatFile.h
MetaSKAT/NAMESPACE
MetaSKAT/data
MetaSKAT/data/Example.rda
MetaSKAT/data/datalist
MetaSKAT/R
MetaSKAT/R/Meta_SSD_Read.R
MetaSKAT/R/Meta_Optimal.R
MetaSKAT/R/Meta_SSD_Write.R
MetaSKAT/R/Meta_SaveData.R
MetaSKAT/R/SSD.R
MetaSKAT/R/Meta_Permutation.R
MetaSKAT/R/Meta_SKAT.R
MetaSKAT/R/Meta_Null_Model.R
MetaSKAT/vignettes
MetaSKAT/vignettes/01.SetID
MetaSKAT/vignettes/03.SetID
MetaSKAT/vignettes/03.fam
MetaSKAT/vignettes/02.SetID
MetaSKAT/vignettes/Example.zip
MetaSKAT/vignettes/02.bed
MetaSKAT/vignettes/01.fam
MetaSKAT/vignettes/03.bim
MetaSKAT/vignettes/01.bim
MetaSKAT/vignettes/01.bed
MetaSKAT/vignettes/02.fam
MetaSKAT/vignettes/02.bim
MetaSKAT/vignettes/03.bed
MetaSKAT/vignettes/MetaSKAT.Rnw
MetaSKAT/MD5
MetaSKAT/build
MetaSKAT/build/vignette.rds
MetaSKAT/DESCRIPTION
MetaSKAT/man
MetaSKAT/man/MetaSKAT_wZ.rd
MetaSKAT/man/Open_MSSD_File_2Read.rd
MetaSKAT/man/Generate_Meta_Files.rd
MetaSKAT/man/Example.rd
MetaSKAT/man/MetaSKAT_MSSD_OneSet.rd
MetaSKAT/man/Meta_Null_Model.rd