GetRA: This function convert OTU matrix to RA matrix.
In MicrobiomeSurv: Biomarker Validation for Microbiome-Based Survival Classification and Prediction
GetRA R Documentation
This function convert OTU matrix to RA matrix.
Description
This function convert OTU matrix to RA matrix.
Usage
GetRA(Micro.mat)
Arguments
Micro.mat
an OTU matrix with OTUs in rows and subjects in columns.
Value
A relative abundance matrix of OTUs
ra
Relative abundance matrixs
Author(s)
Thi Huyen Nguyen, thihuyen.nguyen@uhasselt.be
Olajumoke Evangelina Owokotomo, olajumoke.x.owokotomo@gsk.com
Ziv Shkedy
See Also
GetRA
Examples
# Read dataset
data(Week3_otu)
Week3_otu = data.frame(Week3_otu)
otu_mat_w3 = t(data.matrix(Week3_otu[ , 1:2720]))
# Convert absolute abundance to relative abundance
ra_otu_trim_w3 = GetRA(Micro.mat = otu_mat_w3)
MicrobiomeSurv documentation built on Oct. 12, 2023, 9:06 a.m.
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| GetRA | R Documentation |
This function convert OTU matrix to RA matrix.
Description
This function convert OTU matrix to RA matrix.
Usage
GetRA(Micro.mat)
Arguments
Micro.mat |
an OTU matrix with OTUs in rows and subjects in columns. |
Value
A relative abundance matrix of OTUs
ra |
Relative abundance matrixs |
Author(s)
Thi Huyen Nguyen, thihuyen.nguyen@uhasselt.be
Olajumoke Evangelina Owokotomo, olajumoke.x.owokotomo@gsk.com
Ziv Shkedy
See Also
GetRA
Examples
# Read dataset
data(Week3_otu)
Week3_otu = data.frame(Week3_otu)
otu_mat_w3 = t(data.matrix(Week3_otu[ , 1:2720]))
# Convert absolute abundance to relative abundance
ra_otu_trim_w3 = GetRA(Micro.mat = otu_mat_w3)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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