ms-class: The ms Class.

In MicrobiomeSurv: Biomarker Validation for Microbiome-Based Survival Classification and Prediction

The ms Class.

Description

Class of object returned by function MSpecificCoxPh. plot signature(x = "ms"): Plots for ms class analysis results

Usage

## S4 method for signature 'ms'
show(object)

## S4 method for signature 'ms'
summary(object)

## S4 method for signature 'ms,ANY'
plot(x, y, ...)

Arguments

object	A ms class object
x	A ms class object
y	missing
...	The usual extra arguments to generic functions — see plot, plot.default

Details

Any parameters of plot.default may be passed on to this particular plot method.

show(ms-object)

Slots

Result

A list of dataframes of each output object of coxph for the taxa.

HRRG

A dataframe with estimated taxon-specific HR for low risk group and 95 percent CI.

Group

A matrix of the classification group a subject belongs to for each of the taxon analysis. The taxa are on the rows and the subjects are the columns

Mi.names

The names of the taxon for the analysis

Author(s)

Thi Huyen Nguyen, [e-mail]

Olajumoke Evangelina Owokotomo, [e-mail]

Ziv Shkedy

See Also

MSpecificCoxPh

MicrobiomeSurv documentation built on Oct. 12, 2023, 9:06 a.m.