MixMAP: Implements the MixMAP Algorithm

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A collection of functions to implement the MixMAP algorithm, which performs gene level tests of association using data from a previous GWAS or data from a meta-analysis of several GWAS. Conceptually, genes are detected as significant if the collection of p-values within a gene are determined to be collectively smaller than would be observed by chance.

Author
Gregory J. Matthews
Date of publication
2015-08-10 22:33:54
Maintainer
Gregory J. Matthews <gjm112@gmail.com>
License
GPL-3
Version
1.3.4

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Man pages

MixMAPclass
MixMAP-class
MixMAPexample
A working example of the MixMAP algorithm.
MixMAPpackage
MixMAP: Mixed Modeling of Meta-Analysis P-values
mixmapPI
Implements the MixMAP algorithm using prediction intervals.
mixmapTest
Implements the MixMAP algorithm using hypothesis testing...
plot.MixMAP
Method for creating a MixManhattan plot.
summary.MixMAP
Summary of a 'MixMAP' object

Files in this package

MixMAP
MixMAP/inst
MixMAP/inst/CITATION
MixMAP/NAMESPACE
MixMAP/data
MixMAP/data/MixMAP_example.RData
MixMAP/R
MixMAP/R/mixmapPI.R
MixMAP/R/summary.MixMAP.R
MixMAP/R/MixMAPclass.R
MixMAP/R/plot.MixMAP.R
MixMAP/R/mixmapTest.R
MixMAP/README.md
MixMAP/MD5
MixMAP/DESCRIPTION
MixMAP/man
MixMAP/man/mixmapPI.Rd
MixMAP/man/MixMAPexample.Rd
MixMAP/man/summary.MixMAP.Rd
MixMAP/man/MixMAPclass.Rd
MixMAP/man/plot.MixMAP.Rd
MixMAP/man/mixmapTest.Rd
MixMAP/man/MixMAPpackage.Rd