Description Usage Arguments Details Value Author(s) References Examples
Displays a summary of the MixMAP
object.
1 2 | ## S4 method for signature 'MixMAP'
summary(mixmap.object)
|
mixmap.object |
An object of class |
This method returns up to the top ten detected genes as well as information on the total number of genes and the number of genes detected.
Returns a summary of the MixMAP object
.
Gregory J. Matthews
Foulkes, A.S., Matthews, G.J., Das, U., Ferguson, J., Reilly, M. (2013) “Mixed Modeling of Meta-Analysis P-Values (MixMAP) Suggests Multiple Novel Gene Loci for Low Density Lipoprotein Cholesterol". PLoS ONE 8(2): e54812.
Matthews, G.J. and Foulkes, A.S. (2015) “MixMAP: An R Package for Mixed Modeling of Meta-Analysis $p$ Values in Genetic Association Studies." Journal of Statistical Software. 66(3): 1-11.
1 2 3 4 5 6 7 8 9 10 | data(MixMAP_example)
#Run mixmapTest
MixOut<-mixmapTest(MixMAP_example,pval="GC.Pvalue",snp="MarkerName",
chr="Chr",coord="Coordinate",gene="Gene")
summary(MixOut)
#Run mixmapPI
MixOutPI<-mixmapPI(MixMAP_example,pval="GC.Pvalue",snp="MarkerName",
chr="Chr",coord="Coordinate",gene="Gene")
summary(MixOutPI)
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