ModelMap: Modeling and Map Production using Random Forest and Stochastic Gradient Boosting

Creates sophisticated models of training data and validates the models with an independent test set, cross validation, or in the case of Random Forest Models, with Out Of Bag (OOB) predictions on the training data. Create graphs and tables of the model validation results. Applies these models to GIS .img files of predictors to create detailed prediction surfaces. Handles large predictor files for map making, by reading in the .img files in chunks, and output to the .txt file the prediction for each data chunk, before reading the next chunk of data.

AuthorElizabeth Freeman, Tracey Frescino
Date of publication2016-07-03 10:53:52
MaintainerElizabeth Freeman <eafreeman@fs.fed.us>
LicenseUnlimited
Version3.3.5

View on CRAN

Functions

build.rastLUT Man page
CF.binary Man page
CF.categorical Man page
CF.continuous Man page
CF.int2num Man page
CF.list2df Man page
check.device.type Man page
check.device.type.nodefault Man page
check.model.levels Man page
check.model.type Man page
check.predList Man page
check.response.name Man page
check.response.type Man page
col2trans Man page
correlation.function Man page
create.model Man page
diagnostics.function Man page
explore.categorical Man page
explore.continuous Man page
FNcheck Man page
getRasts Man page
get.test Man page
grd2gri Man page
imp.extract.cf Man page
imp.extract.qrf Man page
imp.extract.rf Man page
imp.extract.sgb Man page
imp.scale Man page
initialize.device Man page
mask.fun Man page
mask.graphic Man page
model.build Man page
model.diagnostics Man page
model.explore Man page
model.importance.plot Man page
model.interaction.plot Man page
ModelMap Man page
model.mapmake Man page
ModelMap-package Man page
model.SGB Man page
prediction.CF.binary Man page
prediction.CF.categorical Man page
prediction.CF.continuous Man page
prediction.model Man page
prediction.rF.binary Man page
prediction.rF.categorical Man page
prediction.rF.continuous Man page
prediction.rF.quantreg Man page
prediction.SGB Man page
production.prediction Man page
projcompare Man page
projfix Man page
REQUIRE.gbm Man page
REQUIRE.party Man page
REQUIRE.quantregForest Man page
rF.binary Man page
rF.categorical Man page
rF.continuous Man page
rF.quantreg Man page
varImpPlot.MM Man page

Files

ModelMap
ModelMap/inst
ModelMap/inst/CITATION
ModelMap/inst/CHANGELOG
ModelMap/inst/README
ModelMap/inst/COPYRIGHTS
ModelMap/inst/extdata
ModelMap/inst/extdata/vignetteexamples
ModelMap/inst/extdata/vignetteexamples/VModelMapData_modis_STK2005097.img
ModelMap/inst/extdata/vignetteexamples/VModelMapData_dem_ELEVM_250.img
ModelMap/inst/extdata/vignetteexamples/VModelMapData.csv
ModelMap/inst/extdata/vignetteexamples/VModelMapData_nlcd_NLCD01_250.img
ModelMap/inst/extdata/vignetteexamples/VModelMapData_LUT.csv
ModelMap/inst/extdata/helpexamples
ModelMap/inst/extdata/helpexamples/LUT_2001.csv
ModelMap/inst/extdata/helpexamples/LUT_2004.csv
ModelMap/inst/extdata/helpexamples/nlcd_subset1.img
ModelMap/inst/extdata/helpexamples/tc01_subset1.img
ModelMap/inst/extdata/helpexamples/tc04_subset1.img
ModelMap/inst/extdata/helpexamples/DATATRAIN.csv
ModelMap/inst/extdata/helpexamples/DATATEST.csv
ModelMap/inst/doc
ModelMap/inst/doc/Vquantile.R
ModelMap/inst/doc/VModelMap.R
ModelMap/inst/doc/Vquantile.Rnw
ModelMap/inst/doc/VModelMap.Rnw
ModelMap/inst/doc/ExploreModelMap.pdf
ModelMap/inst/doc/VModelMap.pdf
ModelMap/inst/doc/ExploreModelMap.Rnw
ModelMap/inst/doc/ExploreModelMap.R
ModelMap/inst/doc/Vquantile.pdf
ModelMap/NAMESPACE
ModelMap/R
ModelMap/R/build.rastLUT.R ModelMap/R/model.mapmake.R ModelMap/R/get.test.R ModelMap/R/model.interaction.plot.R ModelMap/R/model.build.R ModelMap/R/model.diagnostics.R ModelMap/R/internal.R ModelMap/R/model.explore.R ModelMap/R/model.importance.plot.R
ModelMap/vignettes
ModelMap/vignettes/VModelMapData_modis_STK2005097.img
ModelMap/vignettes/VModelMap.bib
ModelMap/vignettes/VModelMapData_dem_ELEVM_250.img
ModelMap/vignettes/VModelMapData.csv
ModelMap/vignettes/Vquantile.Rnw
ModelMap/vignettes/VModelMap.Rnw
ModelMap/vignettes/VModelMapData_nlcd_NLCD01_250.img
ModelMap/vignettes/ExploreModelMap.Rnw
ModelMap/vignettes/VModelMapData_LUT.csv
ModelMap/vignettes/QuantileModelMap.bib
ModelMap/vignettes/ExploreModelMap.bib
ModelMap/MD5
ModelMap/build
ModelMap/build/vignette.rds
ModelMap/DESCRIPTION
ModelMap/man
ModelMap/man/model.explore.Rd ModelMap/man/build.rastLUT.Rd ModelMap/man/ModelMap-package.Rd ModelMap/man/internal.Rd ModelMap/man/get.test.Rd ModelMap/man/model.diagnostics.Rd ModelMap/man/model.interaction.plot.Rd ModelMap/man/model.build.Rd ModelMap/man/model.mapmake.Rd ModelMap/man/col2trans.Rd ModelMap/man/model.importance.plot.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.