ModelMap: Modeling and Map Production using Random Forest and Stochastic Gradient Boosting

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Creates sophisticated models of training data and validates the models with an independent test set, cross validation, or in the case of Random Forest Models, with Out Of Bag (OOB) predictions on the training data. Create graphs and tables of the model validation results. Applies these models to GIS .img files of predictors to create detailed prediction surfaces. Handles large predictor files for map making, by reading in the .img files in chunks, and output to the .txt file the prediction for each data chunk, before reading the next chunk of data.

Author
Elizabeth Freeman, Tracey Frescino
Date of publication
2016-07-03 10:53:52
Maintainer
Elizabeth Freeman <eafreeman@fs.fed.us>
License
Unlimited
Version
3.3.5

View on CRAN

Man pages

build.rastLUT
Build a raster Look-UP-Table for training dataset
col2trans
colors to transparent colors
get.test
Randomly Divide Data into Training and Test Sets
internal
Internal ModelMap Functions
model.build
Model Building
model.diagnostics
Model Predictions and Diagnostics
model.explore
Exploratory data analysis
model.importance.plot
Compares the variable importance of two models with a back to...
model.interaction.plot
plot of two-way model interactions
model.mapmake
Map Making
ModelMap-package
Modeling and Map Production using Random Forest and...

Files in this package

ModelMap
ModelMap/inst
ModelMap/inst/CITATION
ModelMap/inst/CHANGELOG
ModelMap/inst/README
ModelMap/inst/COPYRIGHTS
ModelMap/inst/extdata
ModelMap/inst/extdata/vignetteexamples
ModelMap/inst/extdata/vignetteexamples/VModelMapData_modis_STK2005097.img
ModelMap/inst/extdata/vignetteexamples/VModelMapData_dem_ELEVM_250.img
ModelMap/inst/extdata/vignetteexamples/VModelMapData.csv
ModelMap/inst/extdata/vignetteexamples/VModelMapData_nlcd_NLCD01_250.img
ModelMap/inst/extdata/vignetteexamples/VModelMapData_LUT.csv
ModelMap/inst/extdata/helpexamples
ModelMap/inst/extdata/helpexamples/LUT_2001.csv
ModelMap/inst/extdata/helpexamples/LUT_2004.csv
ModelMap/inst/extdata/helpexamples/nlcd_subset1.img
ModelMap/inst/extdata/helpexamples/tc01_subset1.img
ModelMap/inst/extdata/helpexamples/tc04_subset1.img
ModelMap/inst/extdata/helpexamples/DATATRAIN.csv
ModelMap/inst/extdata/helpexamples/DATATEST.csv
ModelMap/inst/doc
ModelMap/inst/doc/Vquantile.R
ModelMap/inst/doc/VModelMap.R
ModelMap/inst/doc/Vquantile.Rnw
ModelMap/inst/doc/VModelMap.Rnw
ModelMap/inst/doc/ExploreModelMap.pdf
ModelMap/inst/doc/VModelMap.pdf
ModelMap/inst/doc/ExploreModelMap.Rnw
ModelMap/inst/doc/ExploreModelMap.R
ModelMap/inst/doc/Vquantile.pdf
ModelMap/NAMESPACE
ModelMap/R
ModelMap/R/build.rastLUT.R
ModelMap/R/model.mapmake.R
ModelMap/R/get.test.R
ModelMap/R/model.interaction.plot.R
ModelMap/R/model.build.R
ModelMap/R/model.diagnostics.R
ModelMap/R/internal.R
ModelMap/R/model.explore.R
ModelMap/R/model.importance.plot.R
ModelMap/vignettes
ModelMap/vignettes/VModelMapData_modis_STK2005097.img
ModelMap/vignettes/VModelMap.bib
ModelMap/vignettes/VModelMapData_dem_ELEVM_250.img
ModelMap/vignettes/VModelMapData.csv
ModelMap/vignettes/Vquantile.Rnw
ModelMap/vignettes/VModelMap.Rnw
ModelMap/vignettes/VModelMapData_nlcd_NLCD01_250.img
ModelMap/vignettes/ExploreModelMap.Rnw
ModelMap/vignettes/VModelMapData_LUT.csv
ModelMap/vignettes/QuantileModelMap.bib
ModelMap/vignettes/ExploreModelMap.bib
ModelMap/MD5
ModelMap/build
ModelMap/build/vignette.rds
ModelMap/DESCRIPTION
ModelMap/man
ModelMap/man/model.explore.Rd
ModelMap/man/build.rastLUT.Rd
ModelMap/man/ModelMap-package.Rd
ModelMap/man/internal.Rd
ModelMap/man/get.test.Rd
ModelMap/man/model.diagnostics.Rd
ModelMap/man/model.interaction.plot.Rd
ModelMap/man/model.build.Rd
ModelMap/man/model.mapmake.Rd
ModelMap/man/col2trans.Rd
ModelMap/man/model.importance.plot.Rd