ModelMap: Modeling and Map Production using Random Forest and Stochastic Gradient Boosting
Version 3.3.5

Creates sophisticated models of training data and validates the models with an independent test set, cross validation, or in the case of Random Forest Models, with Out Of Bag (OOB) predictions on the training data. Create graphs and tables of the model validation results. Applies these models to GIS .img files of predictors to create detailed prediction surfaces. Handles large predictor files for map making, by reading in the .img files in chunks, and output to the .txt file the prediction for each data chunk, before reading the next chunk of data.

AuthorElizabeth Freeman, Tracey Frescino
Date of publication2016-07-03 10:53:52
MaintainerElizabeth Freeman <eafreeman@fs.fed.us>
LicenseUnlimited
Version3.3.5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ModelMap")

Getting started

Package overview

Popular man pages

build.rastLUT: Build a raster Look-UP-Table for training dataset
get.test: Randomly Divide Data into Training and Test Sets
internal: Internal ModelMap Functions
model.build: Model Building
model.diagnostics: Model Predictions and Diagnostics
model.explore: Exploratory data analysis
ModelMap-package: Modeling and Map Production using Random Forest and...
See all...

All man pages Function index File listing

Man pages

build.rastLUT: Build a raster Look-UP-Table for training dataset
col2trans: colors to transparent colors
get.test: Randomly Divide Data into Training and Test Sets
internal: Internal ModelMap Functions
model.build: Model Building
model.diagnostics: Model Predictions and Diagnostics
model.explore: Exploratory data analysis
model.importance.plot: Compares the variable importance of two models with a back to...
model.interaction.plot: plot of two-way model interactions
model.mapmake: Map Making
ModelMap-package: Modeling and Map Production using Random Forest and...

Functions

CF.binary Man page Source code
CF.categorical Man page Source code
CF.continuous Man page Source code
CF.int2num Man page Source code
CF.list2df Man page Source code
FNcheck Man page Source code
ModelMap Man page
ModelMap-package Man page
REQUIRE.gbm Man page Source code
REQUIRE.party Man page Source code
REQUIRE.quantregForest Man page Source code
build.rastLUT Man page Source code
check.device.type Man page Source code
check.device.type.nodefault Man page Source code
check.model.levels Man page Source code
check.model.type Man page Source code
check.predList Man page Source code
check.response.name Man page Source code
check.response.type Man page Source code
col2trans Man page Source code
correlation.function Man page Source code
create.model Man page Source code
diagnostics.function Man page Source code
explore.categorical Man page Source code
explore.continuous Man page Source code
get.test Man page Source code
getRasts Man page Source code
grd2gri Man page Source code
imp.extract.cf Man page Source code
imp.extract.qrf Man page Source code
imp.extract.rf Man page Source code
imp.extract.sgb Man page Source code
imp.scale Man page Source code
initialize.device Man page Source code
mask.fun Man page Source code Source code
mask.graphic Man page Source code
model.SGB Man page Source code
model.build Man page Source code
model.diagnostics Man page Source code
model.explore Man page Source code
model.importance.plot Man page Source code
model.interaction.plot Man page Source code
model.mapmake Man page Source code
prediction.CF.binary Man page Source code
prediction.CF.categorical Man page Source code
prediction.CF.continuous Man page Source code
prediction.SGB Man page Source code
prediction.model Man page Source code
prediction.rF.binary Man page Source code
prediction.rF.categorical Man page Source code
prediction.rF.continuous Man page Source code
prediction.rF.quantreg Man page Source code
production.prediction Man page Source code
projcompare Man page Source code
projfix Man page Source code
rF.binary Man page Source code
rF.categorical Man page Source code
rF.continuous Man page Source code
rF.quantreg Man page Source code
varImpPlot.MM Man page

Files

inst
inst/CITATION
inst/CHANGELOG
inst/README
inst/COPYRIGHTS
inst/extdata
inst/extdata/vignetteexamples
inst/extdata/vignetteexamples/VModelMapData_modis_STK2005097.img
inst/extdata/vignetteexamples/VModelMapData_dem_ELEVM_250.img
inst/extdata/vignetteexamples/VModelMapData.csv
inst/extdata/vignetteexamples/VModelMapData_nlcd_NLCD01_250.img
inst/extdata/vignetteexamples/VModelMapData_LUT.csv
inst/extdata/helpexamples
inst/extdata/helpexamples/LUT_2001.csv
inst/extdata/helpexamples/LUT_2004.csv
inst/extdata/helpexamples/nlcd_subset1.img
inst/extdata/helpexamples/tc01_subset1.img
inst/extdata/helpexamples/tc04_subset1.img
inst/extdata/helpexamples/DATATRAIN.csv
inst/extdata/helpexamples/DATATEST.csv
inst/doc
inst/doc/Vquantile.R
inst/doc/VModelMap.R
inst/doc/Vquantile.Rnw
inst/doc/VModelMap.Rnw
inst/doc/ExploreModelMap.pdf
inst/doc/VModelMap.pdf
inst/doc/ExploreModelMap.Rnw
inst/doc/ExploreModelMap.R
inst/doc/Vquantile.pdf
NAMESPACE
R
R/build.rastLUT.R
R/model.mapmake.R
R/get.test.R
R/model.interaction.plot.R
R/model.build.R
R/model.diagnostics.R
R/internal.R
R/model.explore.R
R/model.importance.plot.R
vignettes
vignettes/VModelMapData_modis_STK2005097.img
vignettes/VModelMap.bib
vignettes/VModelMapData_dem_ELEVM_250.img
vignettes/VModelMapData.csv
vignettes/Vquantile.Rnw
vignettes/VModelMap.Rnw
vignettes/VModelMapData_nlcd_NLCD01_250.img
vignettes/ExploreModelMap.Rnw
vignettes/VModelMapData_LUT.csv
vignettes/QuantileModelMap.bib
vignettes/ExploreModelMap.bib
MD5
build
build/vignette.rds
DESCRIPTION
man
man/model.explore.Rd
man/build.rastLUT.Rd
man/ModelMap-package.Rd
man/internal.Rd
man/get.test.Rd
man/model.diagnostics.Rd
man/model.interaction.plot.Rd
man/model.build.Rd
man/model.mapmake.Rd
man/col2trans.Rd
man/model.importance.plot.Rd
ModelMap documentation built on May 19, 2017, 8:31 a.m.

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