MotilityLab: Quantitative Analysis of Motion
Version 0.2-5

Statistics to quantify tracks of moving things (x-y-z-t data), such as cells, bacteria or animals. Available measures include mean square displacement, confinement ratio, autocorrelation, straightness, turning angle, and fractal dimension.

AuthorJohannes Textor, Katharina Dannenberg, Jeffrey Berry, Gerhard Burger
Date of publication2016-11-30 18:31:17
MaintainerJohannes Textor <johannes.textor@gmx.de>
LicenseGPL-2
Version0.2-5
URL http://www.motilitylab.net
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("MotilityLab")

Popular man pages

boundingBox: Bounding Box of a Tracks Object
clusterTracks: Cluster Tracks
filterTracks: Filter Tracks
interpolateTrack: Interpolate Track Positions
motilityLab-package: MotilityLab: Quantitative Motion Analysis
prefixes: Get Track Prefixes
read.tracks.csv: Read Tracks from Text File
See all...

All man pages Function index File listing

Man pages

aggregate.tracks: Compute Summary Statistics of Subtracks
applyStaggered: Compute a Measure on a Track in a Staggered Fashion
as.data.frame.tracks: Convert Tracks to Data Frame
as.list.tracks: Convert from Tracks to List
as.tracks.data.frame: Convert from Data Frame to Tracks
BCells: Two-Photon Data: B Cells in a Lymph Node
beaucheminTrack: Simulate a 3D Cell Track Using the Beauchemin Model
boundingBox: Bounding Box of a Tracks Object
brownianTrack: Simulate an Uncorrelated Random Walk
clusterTracks: Cluster Tracks
filterTracks: Filter Tracks
hotellingsTest: Test Unbiasedness of Motion
interpolateTrack: Interpolate Track Positions
maxTrackLength: Length of Longest Track
motilityLab-package: MotilityLab: Quantitative Motion Analysis
Neutrophils: Two-Photon Data: Neutrophils in an Infected Lung
normalizeToDuration: Normalize a Measure to Track Duration
normalizeTracks: Normalize Tracks
plot3d: Plot Tracks in 3D
plotTrackMeasures: Bivariate Scatterplot of Track Measures
plot.tracks: Plot Tracks in 2D
prefixes: Get Track Prefixes
projectDimensions: Extract Spatial Dimensions
read.tracks.csv: Read Tracks from Text File
repairGaps: Process Tracks Containing Gaps
selectTracks: Select Tracks by Measure Values
simulateTracks: Generate Tracks by Simulation
sort.tracks: Sort Track Positions by Time
splitTrack: Split Track into Multiple Tracks
staggered: Staggered Version of a Function
subsample: Subsample Track by Constant Factor
subtracks: Decompose Track(s) into Subtracks
TCells: Two-Photon Data: T Cells in a Lymph Node
timeStep: Compute Time Step of Tracks
TrackMeasures: Track Measures
tracks: Tracks Objects
wrapTrack: Create Track Object from Single Track

Functions

BCells Man page
Neutrophils Man page
TCells Man page
TrackMeasures Man page
aggregate.tracks Man page Source code
applyStaggered Man page Source code
as.data.frame.tracks Man page Source code
as.list.tracks Man page Source code
as.tracks Man page Source code
as.tracks.data.frame Man page Source code
as.tracks.list Man page Source code
asphericity Man page Source code
beaucheminPickNewDirection Source code
beaucheminRotationMatrix Source code
beaucheminSphereSampler Source code
beaucheminTrack Man page Source code
beaucheminTriangularSampler Source code
boundingBox Man page Source code
boundingBoxTrack Source code
brownianTrack Man page Source code
c.tracks Man page Source code
clusterTracks Man page Source code
computeSegmentwiseMeans Source code
computeSubtracksOfISegments Source code
displacement Man page Source code
displacementRatio Man page Source code
displacementVector Man page Source code
duration Man page Source code
filterTracks Man page Source code
fractalDimension Man page Source code
gaps Source code
hotellingsTest Man page Source code
hurstExponent Man page Source code
interpolateTrack Man page Source code
is.tracks Man page Source code
maxDisplacement Man page Source code
maxTrackLength Man page Source code
meanTurningAngle Man page Source code
minMaxOfTwoMatrices Source code
motilityLab Man page
motilityLab-package Man page
normalizeToDuration Man page Source code
normalizeTrack Source code
normalizeTracks Man page Source code
outreachRatio Man page Source code
overallAngle Man page Source code
overallDot Man page Source code
plot.tracks Man page Source code
plot3d Man page Source code
plotTrackMeasures Man page Source code
prefixes Man page Source code
projectDimensions Man page Source code
read.tracks.csv Man page Source code
repairGaps Man page Source code
segmentwiseMeans Source code
selectTracks Man page Source code
setColAlpha Source code
simulateTracks Man page Source code
sort.tracks Man page Source code
speed Man page Source code
splitTrack Man page Source code
squareDisplacement Man page Source code
staggered Man page Source code
straightness Man page Source code
subsample Man page Source code
subtrackIndices Source code
subtracks Man page Source code
timeStep Man page Source code
trackLength Man page Source code
tracks Man page Source code
ulapply Source code
wrapTrack Man page Source code

Files

tests
tests/testthat.R
tests/testthat
tests/testthat/ref_tracks.RData
tests/testthat/testBasics.R
tests/testthat/testLoadingTracks.R
tests/testthat/test1D.R
tests/testthat/testSim.R
tests/testthat/ref_tracks.csv
tests/testthat/ref_tracks_blank_line_sep.csv
tests/testthat/testBorderCases.R
tests/testthat/testNumerics.R
NAMESPACE
data
data/Neutrophils.rda
data/TCells.rda
data/BCells.rda
R
R/track-measures.R
R/track-set-transformations.R
R/functions.R
R/internal.R
R/simulate-tracks.R
MD5
DESCRIPTION
man
man/normalizeTracks.Rd
man/filterTracks.Rd
man/aggregate.tracks.Rd
man/plot3d.Rd
man/simulateTracks.Rd
man/as.tracks.data.frame.Rd
man/boundingBox.Rd
man/wrapTrack.Rd
man/as.list.tracks.Rd
man/BCells.Rd
man/applyStaggered.Rd
man/sort.tracks.Rd
man/tracks.Rd
man/repairGaps.Rd
man/projectDimensions.Rd
man/plotTrackMeasures.Rd
man/read.tracks.csv.Rd
man/splitTrack.Rd
man/normalizeToDuration.Rd
man/subsample.Rd
man/prefixes.Rd
man/TrackMeasures.Rd
man/selectTracks.Rd
man/timeStep.Rd
man/as.data.frame.tracks.Rd
man/maxTrackLength.Rd
man/brownianTrack.Rd
man/motilityLab-package.Rd
man/beaucheminTrack.Rd
man/staggered.Rd
man/TCells.Rd
man/Neutrophils.Rd
man/subtracks.Rd
man/hotellingsTest.Rd
man/interpolateTrack.Rd
man/clusterTracks.Rd
man/plot.tracks.Rd
MotilityLab documentation built on May 19, 2017, 9:02 p.m.

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