MotilityLab: Quantitative Analysis of Motion

Statistics to quantify tracks of moving things (x-y-z-t data), such as cells, bacteria or animals. Available measures include mean square displacement, confinement ratio, autocorrelation, straightness, turning angle, and fractal dimension.

AuthorJohannes Textor, Katharina Dannenberg, Jeffrey Berry, Gerhard Burger
Date of publication2016-11-30 18:31:17
MaintainerJohannes Textor <johannes.textor@gmx.de>
LicenseGPL-2
Version0.2-5
http://www.motilitylab.net

View on CRAN

Man pages

aggregate.tracks: Compute Summary Statistics of Subtracks

applyStaggered: Compute a Measure on a Track in a Staggered Fashion

as.data.frame.tracks: Convert Tracks to Data Frame

as.list.tracks: Convert from Tracks to List

as.tracks.data.frame: Convert from Data Frame to Tracks

BCells: Two-Photon Data: B Cells in a Lymph Node

beaucheminTrack: Simulate a 3D Cell Track Using the Beauchemin Model

boundingBox: Bounding Box of a Tracks Object

brownianTrack: Simulate an Uncorrelated Random Walk

clusterTracks: Cluster Tracks

filterTracks: Filter Tracks

hotellingsTest: Test Unbiasedness of Motion

interpolateTrack: Interpolate Track Positions

maxTrackLength: Length of Longest Track

motilityLab-package: MotilityLab: Quantitative Motion Analysis

Neutrophils: Two-Photon Data: Neutrophils in an Infected Lung

normalizeToDuration: Normalize a Measure to Track Duration

normalizeTracks: Normalize Tracks

plot3d: Plot Tracks in 3D

plotTrackMeasures: Bivariate Scatterplot of Track Measures

plot.tracks: Plot Tracks in 2D

prefixes: Get Track Prefixes

projectDimensions: Extract Spatial Dimensions

read.tracks.csv: Read Tracks from Text File

repairGaps: Process Tracks Containing Gaps

selectTracks: Select Tracks by Measure Values

simulateTracks: Generate Tracks by Simulation

sort.tracks: Sort Track Positions by Time

splitTrack: Split Track into Multiple Tracks

staggered: Staggered Version of a Function

subsample: Subsample Track by Constant Factor

subtracks: Decompose Track(s) into Subtracks

TCells: Two-Photon Data: T Cells in a Lymph Node

timeStep: Compute Time Step of Tracks

TrackMeasures: Track Measures

tracks: Tracks Objects

wrapTrack: Create Track Object from Single Track

Files in this package

MotilityLab
MotilityLab/tests
MotilityLab/tests/testthat.R
MotilityLab/tests/testthat
MotilityLab/tests/testthat/ref_tracks.RData
MotilityLab/tests/testthat/testBasics.R
MotilityLab/tests/testthat/testLoadingTracks.R
MotilityLab/tests/testthat/test1D.R
MotilityLab/tests/testthat/testSim.R
MotilityLab/tests/testthat/ref_tracks.csv
MotilityLab/tests/testthat/ref_tracks_blank_line_sep.csv
MotilityLab/tests/testthat/testBorderCases.R
MotilityLab/tests/testthat/testNumerics.R
MotilityLab/NAMESPACE
MotilityLab/data
MotilityLab/data/Neutrophils.rda
MotilityLab/data/TCells.rda
MotilityLab/data/BCells.rda
MotilityLab/R
MotilityLab/R/track-measures.R MotilityLab/R/track-set-transformations.R MotilityLab/R/functions.R MotilityLab/R/internal.R MotilityLab/R/simulate-tracks.R
MotilityLab/MD5
MotilityLab/DESCRIPTION
MotilityLab/man
MotilityLab/man/normalizeTracks.Rd MotilityLab/man/filterTracks.Rd MotilityLab/man/aggregate.tracks.Rd MotilityLab/man/plot3d.Rd MotilityLab/man/simulateTracks.Rd MotilityLab/man/as.tracks.data.frame.Rd MotilityLab/man/boundingBox.Rd MotilityLab/man/wrapTrack.Rd MotilityLab/man/as.list.tracks.Rd MotilityLab/man/BCells.Rd MotilityLab/man/applyStaggered.Rd MotilityLab/man/sort.tracks.Rd MotilityLab/man/tracks.Rd MotilityLab/man/repairGaps.Rd MotilityLab/man/projectDimensions.Rd MotilityLab/man/plotTrackMeasures.Rd MotilityLab/man/read.tracks.csv.Rd MotilityLab/man/splitTrack.Rd MotilityLab/man/normalizeToDuration.Rd MotilityLab/man/subsample.Rd MotilityLab/man/prefixes.Rd MotilityLab/man/TrackMeasures.Rd MotilityLab/man/selectTracks.Rd MotilityLab/man/timeStep.Rd MotilityLab/man/as.data.frame.tracks.Rd MotilityLab/man/maxTrackLength.Rd MotilityLab/man/brownianTrack.Rd MotilityLab/man/motilityLab-package.Rd MotilityLab/man/beaucheminTrack.Rd MotilityLab/man/staggered.Rd MotilityLab/man/TCells.Rd MotilityLab/man/Neutrophils.Rd MotilityLab/man/subtracks.Rd MotilityLab/man/hotellingsTest.Rd MotilityLab/man/interpolateTrack.Rd MotilityLab/man/clusterTracks.Rd MotilityLab/man/plot.tracks.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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