MultiPhen: A Package to Test for Pleiotropic Effects

Performs genetic association tests between SNPs (one-at-a-time) and multiple phenotypes (separately or in joint model).

AuthorLachlan Coin, Paul O'Reilly, Yotsawat Pompyen, Clive Hoggart and Federico Calboli
Date of publication2015-07-06 19:18:09
MaintainerFederico Calboli <federico.calboli@helsinki.fi>
LicenseGPL-2
Version2.0.1

View on CRAN

Files in this package

MultiPhen
MultiPhen/inst
MultiPhen/inst/doc
MultiPhen/inst/doc/MultiPhen.R
MultiPhen/inst/doc/MultiPhen.Rnw
MultiPhen/inst/doc/MultiPhen.pdf
MultiPhen/NAMESPACE
MultiPhen/demo
MultiPhen/demo/MultiPhen-demo.R
MultiPhen/demo/00Index
MultiPhen/data
MultiPhen/data/snps.imputed.rda
MultiPhen/data/snps.rda
MultiPhen/data/pheno.rda
MultiPhen/R
MultiPhen/R/mPhenSimulate.R MultiPhen/R/MultiPhen-internal.R MultiPhen/R/mPhenIO.R MultiPhen/R/mPhen.R MultiPhen/R/zzz.R
MultiPhen/vignettes
MultiPhen/vignettes/hapmap2.fam
MultiPhen/vignettes/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_extract.impute
MultiPhen/vignettes/hapmap2.bim
MultiPhen/vignettes/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_extract.vcf.gz
MultiPhen/vignettes/hapmap2.bed
MultiPhen/vignettes/ALL.chr21.integrated.phase1.v3.20101123.snps.indels.svs.genotypes.extract.impute
MultiPhen/vignettes/MultiPhen.Rnw
MultiPhen/vignettes/ALL.chr21.integrated.phase1.v3.20101123.snps.indels.svs.genotypes.extract.vcf.gz
MultiPhen/vignettes/pheno.txt
MultiPhen/vignettes/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_extract.zip
MultiPhen/vignettes/ALL.chr21.integrated.phase1.v3.20101123.snps.indels.svs.genotypes.extract.zip
MultiPhen/MD5
MultiPhen/build
MultiPhen/build/vignette.rds
MultiPhen/DESCRIPTION
MultiPhen/man
MultiPhen/man/mPhen.cca.Rd MultiPhen/man/pheno.Rd MultiPhen/man/MultiPhen-internal.Rd MultiPhen/man/mPhen.simulate.Rd MultiPhen/man/snps.imputed.Rd MultiPhen/man/mPhen.options.Rd MultiPhen/man/mPhen.sampleGeno.Rd MultiPhen/man/mPhen.plotCorrelation.Rd MultiPhen/man/mPhen.sampleCovar.Rd MultiPhen/man/mPhen.assoc.Rd MultiPhen/man/mPhen.readGenotypes.Rd MultiPhen/man/snps.Rd MultiPhen/man/mPhen.writeOutput.Rd MultiPhen/man/mPhen.preparePheno.Rd MultiPhen/man/mPhen.defineOptions.Rd MultiPhen/man/mPhen.readPhenoFiles.Rd MultiPhen/man/mPhen.Rd MultiPhen/man/MultiPhen-package.Rd MultiPhen/man/read.plink.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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