MultiPhen: A Package to Test for Pleiotropic Effects

Performs genetic association tests between SNPs (one-at-a-time) and multiple phenotypes (separately or in joint model).

AuthorLachlan Coin, Paul O'Reilly, Yotsawat Pompyen, Clive Hoggart and Federico Calboli
Date of publication2015-07-06 19:18:09
MaintainerFederico Calboli <federico.calboli@helsinki.fi>
LicenseGPL-2
Version2.0.1

View on CRAN

Functions

mPhen Man page
mPhen.assoc Man page
mPhen.assoc Man page
mPhen.cca Man page
mPhen.defineOptions Man page
mPhen.options Man page
mPhen.plotCorrelation Man page
mPhen.preparePheno Man page
mPhen.readGenotypes Man page
mPhen.readPhenoFiles Man page
mPhen.sampleCovar Man page
mPhen.sampleGeno Man page
mPhen.simulate Man page
mPhen.writeOutput Man page
MultiPhen Man page
MultiPhen-internal Man page
MultiPhen-package Man page
pheno Man page
read.plink Man page
snps Man page
snps.imputed Man page

Files

MultiPhen
MultiPhen/inst
MultiPhen/inst/doc
MultiPhen/inst/doc/MultiPhen.R
MultiPhen/inst/doc/MultiPhen.Rnw
MultiPhen/inst/doc/MultiPhen.pdf
MultiPhen/NAMESPACE
MultiPhen/demo
MultiPhen/demo/MultiPhen-demo.R
MultiPhen/demo/00Index
MultiPhen/data
MultiPhen/data/snps.imputed.rda
MultiPhen/data/snps.rda
MultiPhen/data/pheno.rda
MultiPhen/R
MultiPhen/R/mPhenSimulate.R MultiPhen/R/MultiPhen-internal.R MultiPhen/R/mPhenIO.R MultiPhen/R/mPhen.R MultiPhen/R/zzz.R
MultiPhen/vignettes
MultiPhen/vignettes/hapmap2.fam
MultiPhen/vignettes/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_extract.impute
MultiPhen/vignettes/hapmap2.bim
MultiPhen/vignettes/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_extract.vcf.gz
MultiPhen/vignettes/hapmap2.bed
MultiPhen/vignettes/ALL.chr21.integrated.phase1.v3.20101123.snps.indels.svs.genotypes.extract.impute
MultiPhen/vignettes/MultiPhen.Rnw
MultiPhen/vignettes/ALL.chr21.integrated.phase1.v3.20101123.snps.indels.svs.genotypes.extract.vcf.gz
MultiPhen/vignettes/pheno.txt
MultiPhen/vignettes/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_extract.zip
MultiPhen/vignettes/ALL.chr21.integrated.phase1.v3.20101123.snps.indels.svs.genotypes.extract.zip
MultiPhen/MD5
MultiPhen/build
MultiPhen/build/vignette.rds
MultiPhen/DESCRIPTION
MultiPhen/man
MultiPhen/man/mPhen.cca.Rd MultiPhen/man/pheno.Rd MultiPhen/man/MultiPhen-internal.Rd MultiPhen/man/mPhen.simulate.Rd MultiPhen/man/snps.imputed.Rd MultiPhen/man/mPhen.options.Rd MultiPhen/man/mPhen.sampleGeno.Rd MultiPhen/man/mPhen.plotCorrelation.Rd MultiPhen/man/mPhen.sampleCovar.Rd MultiPhen/man/mPhen.assoc.Rd MultiPhen/man/mPhen.readGenotypes.Rd MultiPhen/man/snps.Rd MultiPhen/man/mPhen.writeOutput.Rd MultiPhen/man/mPhen.preparePheno.Rd MultiPhen/man/mPhen.defineOptions.Rd MultiPhen/man/mPhen.readPhenoFiles.Rd MultiPhen/man/mPhen.Rd MultiPhen/man/MultiPhen-package.Rd MultiPhen/man/read.plink.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.