MultiPhen: A Package to Test for Pleiotropic Effects

Performs genetic association tests between SNPs (one-at-a-time) and multiple phenotypes (separately or in joint model).

Install the latest version of this package by entering the following in R:
install.packages("MultiPhen")
AuthorLachlan Coin, Paul O'Reilly, Yotsawat Pompyen, Clive Hoggart and Federico Calboli
Date of publication2015-07-06 19:18:09
MaintainerFederico Calboli <federico.calboli@helsinki.fi>
LicenseGPL-2
Version2.0.1

View on CRAN

Functions

mPhen Man page
mPhen.assoc Man page
mPhen.cca Man page
mPhen.defineOptions Man page
mPhen.options Man page
mPhen.plotCorrelation Man page
mPhen.preparePheno Man page
mPhen.readGenotypes Man page
mPhen.readPhenoFiles Man page
mPhen.sampleCovar Man page
mPhen.sampleGeno Man page
mPhen.simulate Man page
mPhen.writeOutput Man page
MultiPhen Man page
MultiPhen-internal Man page
MultiPhen-package Man page
pheno Man page
read.plink Man page
snps Man page
snps.imputed Man page

Files

inst
inst/doc
inst/doc/MultiPhen.R
inst/doc/MultiPhen.Rnw
inst/doc/MultiPhen.pdf
NAMESPACE
demo
demo/MultiPhen-demo.R
demo/00Index
data
data/snps.imputed.rda
data/snps.rda
data/pheno.rda
R
R/mPhenSimulate.R R/MultiPhen-internal.R R/mPhenIO.R R/mPhen.R R/zzz.R
vignettes
vignettes/hapmap2.fam
vignettes/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_extract.impute
vignettes/hapmap2.bim
vignettes/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_extract.vcf.gz
vignettes/hapmap2.bed
vignettes/ALL.chr21.integrated.phase1.v3.20101123.snps.indels.svs.genotypes.extract.impute
vignettes/MultiPhen.Rnw
vignettes/ALL.chr21.integrated.phase1.v3.20101123.snps.indels.svs.genotypes.extract.vcf.gz
vignettes/pheno.txt
vignettes/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_extract.zip
vignettes/ALL.chr21.integrated.phase1.v3.20101123.snps.indels.svs.genotypes.extract.zip
MD5
build
build/vignette.rds
DESCRIPTION
man
man/mPhen.cca.Rd man/pheno.Rd man/MultiPhen-internal.Rd man/mPhen.simulate.Rd man/snps.imputed.Rd man/mPhen.options.Rd man/mPhen.sampleGeno.Rd man/mPhen.plotCorrelation.Rd man/mPhen.sampleCovar.Rd man/mPhen.assoc.Rd man/mPhen.readGenotypes.Rd man/snps.Rd man/mPhen.writeOutput.Rd man/mPhen.preparePheno.Rd man/mPhen.defineOptions.Rd man/mPhen.readPhenoFiles.Rd man/mPhen.Rd man/MultiPhen-package.Rd man/read.plink.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.