mPhen.options: Retrieves default mPhen options, and descriptions.
In MultiPhen: A Package to Test for Multi-Trait Association
Description
Usage
Arguments
Value
Description
This command is used to get options which can be modified to control the behaviour of MultiPhen commands.
It provides a list of options which are relevant to a particular command. For example, mPhen.assoc() has its behavioiur controlled by options
in mPhen.options("regression"). In order to get a list of all options, you can type mPhen.options(descr=TRUE).
Usage
1
2
mPhen.options(type=c("regression", "plot", "geno.input",
"pheno.input","meta.analysis","misc"), descr = FALSE)
Arguments
type
A value which can take any of the following values: "regression", "plot","geno.input","pheno.input","meta.analysis","misc".
descr
If set to TRUE, then returns descriptions of all the options. If FALSE, then returns the values of all the options.
Value
A list of default option values. Note, the default value for opts = mPhen.options("regression"), has opts$inverseRegress =TRUE, opts$JointModel = TRUE and opts$geno.link = "ordinal", which is the standard multiPhen model.
MultiPhen documentation built on Feb. 9, 2020, 5:07 p.m.
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Description Usage Arguments Value
Description
This command is used to get options which can be modified to control the behaviour of MultiPhen commands. It provides a list of options which are relevant to a particular command. For example, mPhen.assoc() has its behavioiur controlled by options in mPhen.options("regression"). In order to get a list of all options, you can type mPhen.options(descr=TRUE).
Usage
1 2 | mPhen.options(type=c("regression", "plot", "geno.input",
"pheno.input","meta.analysis","misc"), descr = FALSE)
|
Arguments
type |
A value which can take any of the following values: "regression", "plot","geno.input","pheno.input","meta.analysis","misc". |
descr |
If set to TRUE, then returns descriptions of all the options. If FALSE, then returns the values of all the options. |
Value
A list of default option values. Note, the default value for opts = mPhen.options("regression"), has opts$inverseRegress =TRUE, opts$JointModel = TRUE and opts$geno.link = "ordinal", which is the standard multiPhen model.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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