Man pages for MultiPhen
A Package to Test for Multi-Trait Association
| mPhen | A function for the genetic association testing of multiple... |
| mPhen.assoc | A function for the genetic association testing of multiple... |
| mPhen.cca | Sparse canonical correlation analysis |
| mPhen.defineOptions | Defines and modifies options. |
| mPhen.options | Retrieves default mPhen options, and descriptions. |
| mPhen.plotCorrelation | Plots correlation between phenotype values conditional on... |
| mPhen.preparePheno | Prepare phenotype data for analysis |
| mPhen.readGenotypes | Open, and read from a read connection to a genotype file |
| mPhen.readPhenoFiles | Read and merge phenotype files |
| mPhen.sampleCovar | Generates a covariance matrix. |
| mPhen.sampleGeno | Sample genotypes |
| mPhen.simulate | Simulates phenotypes according to a correlation structure. |
| mPhen.writeOutput | Prepares output files and plots from MultiPhen results |
| MultiPhen-internal | Internal MultiPhen objects |
| MultiPhen-package | MultiPhen, a package for the genetic association testing of... |
| pheno | A dummy phenotype dataset that provides an example of the... |
| read.plink | A function to read (small) binary PLINK binary files in a R... |
| snps | A dummy snp dataset that provides an example of the input snp... |
| snps.imputed | Imputed SNP dataset |
