NEpiC: Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals

Package for a Network assisted algorithm for Epigenetic studies using mean and variance Combined signals: NEpiC. NEpiC combines both signals in mean and variance differences in methylation level between case and control groups searching for differentially methylated sub-networks (modules) using the protein-protein interaction network.

Author
Peifeng Ruan
Date of publication
2016-03-26 15:13:10
Maintainer
Peifeng Ruan <pruan12@fudan.edu.cn>
License
GPL-2
Version
1.0.1

View on CRAN

Man pages

candidate_genes
Chosing candidate genes.
c_dms
Combined signals dense modules searching algorithm.
c_score
Computing the mean and variance combined signal scores
permutation
Validating identified modules using permutations

Files in this package

NEpiC
NEpiC/NAMESPACE
NEpiC/R
NEpiC/R/seedQueryJ.r
NEpiC/R/permutation.r
NEpiC/R/integGM.r
NEpiC/R/candidate_genes.r
NEpiC/R/node2treePath.r
NEpiC/R/c_score.r
NEpiC/R/globalQueryJ.r
NEpiC/R/c_dms.r
NEpiC/MD5
NEpiC/DESCRIPTION
NEpiC/man
NEpiC/man/candidate_genes.Rd
NEpiC/man/c_score.Rd
NEpiC/man/c_dms.Rd
NEpiC/man/permutation.Rd