candidate_genes: Chosing candidate genes.
In NEpiC: Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals
Description
Usage
Arguments
Value
References
Examples
Description
Chosing genes in top ranked modules as candidate genes for outcomes. Further prioritized candidate genes can be chosen based on percentages selected by top ranked modules selected if prioritizing = T.
Usage
1
candidate_genes(res, pct = 0.01, prioritizing)
Arguments
res
The result for c_dms.
pct
A float which determines the number of candidate genes. For example, if pct is 0.01 as default setting, the genes in top 1 percent modules will be chosen as the candidate genes.
prioritizing
To further prioritize the candidate genes or not.
Value
A list for candidate genes or prioritized candidate genes.
References
NEpiC: a Network-assisted algorithm for Epigenetic studies using mean and variance Combined signals Peifeng Ruan, Jing Shen, Regina M. Santella, Shuigeng Zhou, Shuang Wang.(2015)
Examples
1
# candidate_genes(res, pct = 0.01, prioritizing = T)
NEpiC documentation built on May 1, 2019, 10:29 p.m.
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Description Usage Arguments Value References Examples
Description
Chosing genes in top ranked modules as candidate genes for outcomes. Further prioritized candidate genes can be chosen based on percentages selected by top ranked modules selected if prioritizing = T.
Usage
1 | candidate_genes(res, pct = 0.01, prioritizing)
|
Arguments
res |
The result for c_dms. |
pct |
A float which determines the number of candidate genes. For example, if pct is 0.01 as default setting, the genes in top 1 percent modules will be chosen as the candidate genes. |
prioritizing |
To further prioritize the candidate genes or not. |
Value
A list for candidate genes or prioritized candidate genes.
References
NEpiC: a Network-assisted algorithm for Epigenetic studies using mean and variance Combined signals Peifeng Ruan, Jing Shen, Regina M. Santella, Shuigeng Zhou, Shuang Wang.(2015)
Examples
1 | # candidate_genes(res, pct = 0.01, prioritizing = T)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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