NGLVieweR-shiny: Shiny bindings for NGLVieweR

In NGLVieweR: Interactive 3D Visualization of Molecular Structures

Description

Output and render functions for using NGLVieweR within Shiny applications and interactive Rmd documents.

Usage

NGLVieweROutput(outputId, width = "100%", height = "400px")

renderNGLVieweR(expr, env = parent.frame(), quoted = FALSE)

NGLVieweR_proxy(id, session = shiny::getDefaultReactiveDomain())

Arguments

outputId	output variable to read from
width, height	Must be a valid CSS unit (like '100%', '400px', 'auto') or a number, which will be coerced to a string and have 'px' appended.
expr	An expression that generates a NGLVieweR.
env	The environment in which to evaluate expr.
quoted	Is expr a quoted expression (with quote())? This is useful if you want to save an expression in a variable.
id	single-element character vector indicating the output ID of the chart to modify (if invoked from a Shiny module, the namespace will be added automatically)
session	The Shiny session object to which the map belongs; usually the default value will suffice.

Value

NGLVieweR object that can be placed in the UI.

See Also

NGLVieweR_example()

Examples

if (interactive()) {
library(shiny)

ui <- fluidPage(
  titlePanel("Viewer with API inputs"),
  sidebarLayout(
    sidebarPanel(
      textInput("selection", "Selection", "1-20"),
      selectInput("type", "Type", c("ball+stick", "cartoon", "backbone")),
      selectInput("color", "Color", c("orange", "grey", "white")),
      actionButton("add", "Add"),
      actionButton("remove", "Remove")
    ),
    mainPanel(
      NGLVieweROutput("structure")
    )
  )
)
server <- function(input, output) {
  output$structure <- renderNGLVieweR({
    NGLVieweR("7CID") %>%
      addRepresentation("cartoon",
        param = list(name = "cartoon", color = "residueindex")
      ) %>%
      stageParameters(backgroundColor = input$backgroundColor) %>%
      setQuality("high") %>%
      setFocus(0) %>%
      setSpin(TRUE)
  })
  observeEvent(input$add, {
    NGLVieweR_proxy("structure") %>%
      addSelection(isolate(input$type),
        param =
          list(
            name = "sel1",
            sele = isolate(input$selection),
            color = isolate(input$color)
          )
      )
  })

  observeEvent(input$remove, {
    NGLVieweR_proxy("structure") %>%
      removeSelection("sel1")
  })
}
shinyApp(ui, server)
}

NGLVieweR documentation built on June 1, 2021, 9:08 a.m.