setSuperpose: Set superpose

In NGLVieweR: Interactive 3D Visualization of Molecular Structures

Set superpose

Description

Enable or disable superposition of multiple structures, with options to specify the reference structure and selection strings for alignment.

Usage

setSuperpose(
  NGLVieweR,
  reference = 1,
  sele_reference,
  sele_target,
  superpose = TRUE
)

Arguments

NGLVieweR	A NGLVieweR object.
reference	The index of the reference structure to align other structures to. Defaults to 1 (the first loaded structure).
sele_reference	Selection string for the reference structure, specifying which parts to align. Mandatory.
sele_target	Selection string for each target structure, specifying which parts to align. Mandatory.
superpose	Logical; if TRUE (default), enable superposition of multiple structures. Set to FALSE to disable.

Value

Sets the superpose list in the NGLVieweR htmlwidgets object.

Examples

NGLVieweR("1GZM") %>%
  addRepresentation("cartoon", param = list(color = "blue")) %>%
  addStructure("1U19") %>%
  addRepresentation("cartoon", param = list(color = "orange")) %>%
  setSuperpose(
    reference = 1, 
    sele_reference = ":A", 
    sele_target = ":A", 
    superpose = TRUE
  )

NGLVieweR documentation built on April 4, 2025, 4:33 a.m.