NMreadSimModTab: Read simulation results from rds objects and/or NMsimModTab...

In NMsim: Seamless 'Nonmem' Simulation Platform

Read simulation results from rds objects and/or NMsimModTab objects

Description

Read simulation results from rds objects and/or NMsimModTab objects

Usage

NMreadSimModTab(
  x,
  check.time = FALSE,
  dir.sims,
  wait = FALSE,
  skip.missing = FALSE,
  quiet = FALSE,
  progress,
  as.fun
)

Arguments

x	Path to the simulation-specific rds file generated by NMsim, typically called 'NMsim_MetaData.rds'. Can also be a table of simulation runs as stored in 'rds' files by 'NMsim'. The latter should almost never be used.
check.time	If found, check whether 'fst' file modification time is newer than 'rds' file. The 'fst' is generated based on information in ‘rds', but notice that some systems don’t preserve the file modification times. Becasue of that, 'check.time' is 'FALSE' by default.
dir.sims	By default, 'NMreadSim' will use information about the relative path from the results table file ('_MetaData.rds') to the Nonmem simulation results. If these paths have changed, or for other reasons this doesn't work, you can use the 'dir.sims' argument to specify where to find the Nonmem simulation results. If an '.fst' file was already generated and is found next to the '_MetaData.rds', the path to the Nonmem simulation results is not used.
wait	If simulations seem to not be done yet, wait for them to finish? If not, an error will be thrown. If you choose to wait, the risk is results never come. 'NMreadSim' will be waiting for an 'lst' file. If Nonmem fails, it will normally generate an 'lst' file. But if 'NMTRAN' fails (checks of control stream prior to running Nonmem), the 'lst' file is not generated. Default is not to wait.
quiet	Turn off some messages about what is going on? Default is to report the messages.
progress	Track progress? Default is 'TRUE' if 'quiet' is FALSE and more than one model is being simulated. The progress tracking is based on the number of models completed, not the status of the individual models.
as.fun	The default is to return data as a data.frame. Pass a function (say 'tibble::as_tibble') in as.fun to convert to something else. If data.tables are wanted, use as.fun="data.table". The default can be configured using NMdataConf.

NMsim documentation built on Nov. 2, 2024, 9:06 a.m.