Man pages for NPflow
Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data

burn.DPMMclustBurning MCMC iterations from a Dirichlet Process Mixture...
cluster_est_binderPoint estimate of the partition for the Binder loss function
cluster_est_FmeasurePoint estimate of the partition using the F-measure as the...
cluster_est_Mbinder_normPoint estimate of the partition using a modified Binder loss...
cluster_est_pearGets a point estimate of the partition using posterior...
cytoScatterScatterplot of flow cytometry data
DPMGibbsNSlice Sampling of the Dirichlet Process Mixture Model with a...
DPMGibbsN_parallelSlice Sampling of the Dirichlet Process Mixture Model with a...
DPMGibbsN_SeqPriorSlice Sampling of Dirichlet Process Mixture of Gaussian...
DPMGibbsSkewNSlice Sampling of Dirichlet Process Mixture of skew normal...
DPMGibbsSkewN_parallelParallel Implementation of Slice Sampling of Dirichlet...
DPMGibbsSkewTSlice Sampling of Dirichlet Process Mixture of skew...
DPMGibbsSkewT_parallelSlice Sampling of Dirichlet Process Mixture of skew...
DPMGibbsSkewT_SeqPriorSlice Sampling of Dirichlet Process Mixture of skew...
DPMGibbsSkewT_SeqPrior_parallelSlice Sampling of Dirichlet Process Mixture of skew...
DPMpostPosterior estimation for Dirichlet process mixture of...
evalClustLossELoss of a partition point estimate compared to a gold...
FlimitedCompute a limited F-measure
FmeasureCC++ implementation of the F-measure computation
FmeasureC_no0C++ implementation of the F-measure computation without the...
Fmeasure_costCMultiple cost computations with Fmeasure as the loss function
invwishrndSample from a inverse-Wishart distribution
lgamma_mvMultivariate log gamma function
MAP_sNiW_mmEMEM MAP for mixture of sNiW
methods.summaryDPMMclustMethods for a summary of a 'DPMMclust' object
MLE_gammaMLE for Gamma distribution
MLE_NiW_mmEMEM MLE for mixture of NiW
MLE_sNiWMLE for sNiW distributed observations
MLE_sNiW_mmEMEM MLE for mixture of sNiW
mmNiWpdfmultivariate Normal inverse Wishart probability density...
mmNiWpdfCC++ implementation of multivariate Normal inverse Wishart...
mmsNiWlogpdfProbability density function of multiple structured Normal...
mmsNiWpdfCC++ implementation of multivariate structured Normal inverse...
mmvnpdfCC++ implementation of multivariate Normal probability density...
mmvsnpdfCC++ implementation of multivariate skew Normal probability...
mmvstpdfCC++ implementation of multivariate Normal probability density...
mmvtpdfCC++ implementation of multivariate Normal probability density...
mvnlikCC++ implementation of multivariate Normal probability density...
mvnpdfmultivariate-Normal probability density function
mvnpdfCC++ implementation of multivariate normal probability density...
mvsnlikCC++ implementation of multivariate skew normal likelihood...
mvsnpdfmultivariate Skew-Normal probability density function
mvstlikCC++ implementation of multivariate skew t likelihood function...
mvstpdfmultivariate skew-t probability density function
mvtpdfmultivariate Student's t-distribution probability density...
NPflow-packageBayesian Nonparametrics for Automatic Gating of Flow...
NuMatParCC++ implementation of similarity matrix computation using...
plot_ConvDPMConvergence diagnostic plots
plot_DPMPlot of a Dirichlet process mixture of gaussian distribution...
plot_DPMsnPlot of a Dirichlet process mixture of skew normal...
plot_DPMstPlot of a Dirichlet process mixture of skew t-distribution...
postProcess.DPMMclustPost-processing Dirichlet Process Mixture Models results to...
priormixConstruction of an Empirical based prior
rCRPGenerating cluster data from the Chinese Restaurant Process
rNiWSample from a Normal inverse-Wishart distribution whose...
rNNiWSample from a normal inverse Wishart distribution whose...
sample_alphaSampler for the concentration parameter of a Dirichlet...
sampleClassCC++ implementation of the multinomial sampling from a matrix...
similarityMatComputes the coclustering (or similarity) matrix
similarityMatCC++ implementation
similarityMat_nocostCC++ implementation
summary.DPMMclustSummarizing Dirichlet Process Mixture Models
traceEpsCC++ implementation of residual trace computation step used...
update_SSReturn updated sufficient statistics S with new data matrix z
update_SSsnReturn updated sufficient statistics S with new data matrix z
update_SSstReturn updated sufficient statistics S for skew...
vclust2mcoclustCC++ implementation
wishrndSample from a Wishart distribution
NPflow documentation built on Aug. 3, 2017, 1:02 a.m.