API for Nestimate
Network Estimation, Bootstrap, and Higher-Order Analysis
| Global functions | |
|---|---|
| .aggregate_metadata | Source code |
| .apply_scaling | Source code |
| .ar_empty_result | Source code |
| .ar_generate_candidates | Source code |
| .ar_generate_rules | Source code |
| .ar_parse_input | Source code |
| .ar_transactions_to_matrix | Source code |
| .as_netobject | Source code |
| .auto_detect_clusters | Man page Source code |
| .auto_legend_size | Source code |
| .betweenness | Source code |
| .bg_build_edge_names | Source code |
| .bg_case_drop | Source code |
| .bg_centrality_diff_test | Source code |
| .bg_compute_centrality | Source code |
| .bg_cs_coefficient | Source code |
| .bg_cs_label | Source code |
| .bg_edge_diff_test | Source code |
| .bg_estimate_once | Source code |
| .bg_find_selected_lambda | Source code |
| .bg_plot_centrality_diff | Source code |
| .bg_plot_edge_diff | Source code |
| .bg_plot_edges | Source code |
| .bg_plot_inclusion | Source code |
| .bg_plot_stability | Source code |
| .bg_threshold_network | Source code |
| .bg_upper_tri_indices | Source code |
| .bootstrap_association | Source code |
| .bootstrap_transition | Source code |
| .bron_kerbosch_all | Source code |
| .build_bootstrap_summary | Source code |
| .build_cluster_lookup | Man page Source code |
| .build_from_transitions | Man page Source code |
| .build_mcml_edgelist | Man page Source code |
| .build_mcml_sequence | Man page Source code |
| .build_pairs_long | Source code |
| .build_pairs_wide | Source code |
| .build_permutation_summary | Source code |
| .build_qgram_tdm | Source code |
| .build_simplicial_clique | Source code |
| .build_simplicial_pathway | Source code |
| .build_simplicial_vr | Source code |
| .calculate_cs | Source code |
| .clean_states | Source code |
| .closeness | Source code |
| .co_compute_matrix | Source code |
| .co_detect_format | Source code |
| .co_normalize | Source code |
| .co_parse_binary | Source code |
| .co_parse_delimited | Source code |
| .co_parse_list | Source code |
| .co_parse_long | Source code |
| .co_parse_multi_delimited | Source code |
| .co_parse_wide | Source code |
| .co_transactions_to_matrix | Source code |
| .coerce_sequence_input | Source code |
| .compute_betti | Source code |
| .compute_bootstrap_stats | Source code |
| .compute_centralities | Source code |
| .compute_cluster_profiles | Source code |
| .compute_initial_probs | Source code |
| .compute_lambda_path | Source code |
| .cosine_dist_r | Source code |
| .cosine_matrix_tdm | Source code |
| .count_attention_long | Source code |
| .count_attention_wide | Source code |
| .count_components | Source code |
| .count_cooccurrence_long | Source code |
| .count_cooccurrence_wide | Source code |
| .count_transitions | Source code |
| .count_transitions_long | Source code |
| .count_transitions_wide | Source code |
| .cs_extract_patterns | Source code |
| .cs_parse_input | Source code |
| .cs_pattern_statistic | Source code |
| .decompose_multilevel | Source code |
| .detect_mcml_input | Man page Source code |
| .dissimilarity_matrix_r | Source code |
| .dissimilarity_matrix_stringdist | Source code |
| .dl_dist_r | Source code |
| .draw_legend_in_oma | Source code |
| .encode_sequences | Source code |
| .encode_states | Source code |
| .estimator_attention | Source code |
| .estimator_co_occurrence | Source code |
| .estimator_cor | Source code |
| .estimator_frequency | Source code |
| .estimator_glasso | Source code |
| .estimator_ising | Source code |
| .estimator_mgm | Source code |
| .estimator_pcor | Source code |
| .estimator_relative | Source code |
| .estimator_wtna | Source code |
| .estimator_wtna_core | Source code |
| .expand_to_faces | Source code |
| .extract_edges_from_matrix | Source code |
| .extract_persistence | Source code |
| .extract_sequence_data | Source code |
| .find_all_cliques | Source code |
| .floyd_warshall_sp | Source code |
| .fmt_edgelist | Source code |
| .fmt_follows | Source code |
| .fmt_frequency | Source code |
| .fmt_onehot | Source code |
| .get_qgram_r | Source code |
| .gimme_build_syntax | Source code |
| .gimme_extract_results | Source code |
| .gimme_find_weakest | Source code |
| .gimme_fit_and_mi | Source code |
| .gimme_fit_and_z | Source code |
| .gimme_fit_final | Source code |
| .gimme_fit_lavaan | Source code |
| .gimme_ind_forward_search | Source code |
| .gimme_individual_search | Source code |
| .gimme_plot_matrix | Source code |
| .gimme_prepare_data | Source code |
| .gimme_prune_paths | Source code |
| .gimme_select_path | Source code |
| .gimme_stabilize | Source code |
| .gimme_test_weights | Source code |
| .hamming_dist_r | Source code |
| .hamming_matrix_outer | Source code |
| .ho_cograph_fields | Source code |
| .hon_add_to_rules | Source code |
| .hon_assemble_output | Source code |
| .hon_build_distributions | Source code |
| .hon_build_network | Source code |
| .hon_build_observations | Source code |
| .hon_build_source_cache | Source code |
| .hon_decode | Source code |
| .hon_encode | Source code |
| .hon_extend_rule | Source code |
| .hon_extract_rules | Source code |
| .hon_get_extensions | Source code |
| .hon_graph_to_edgelist | Source code |
| .hon_key_len | Source code |
| .hon_kld | Source code |
| .hon_kld_threshold | Source code |
| .hon_parse_input | Source code |
| .hon_rewire | Source code |
| .hon_rewire_tails | Source code |
| .hon_sequence_to_node | Source code |
| .honem_neighborhood_matrix | Source code |
| .honem_svd | Source code |
| .honem_transition_matrix | Source code |
| .honp_add_to_rules | Source code |
| .honp_build_order1 | Source code |
| .honp_extend_observation | Source code |
| .honp_extend_rule | Source code |
| .honp_extend_source_fast | Source code |
| .honp_extract_rules | Source code |
| .honp_max_divergence | Source code |
| .hypa_compute_scores | Source code |
| .hypa_fit_xi | Source code |
| .ising_nodewise_ebic | Source code |
| .jaccard_dist_r | Source code |
| .jaccard_matrix_tdm | Source code |
| .jaro_dist_r | Source code |
| .jw_dist_r | Source code |
| .lcs_dist_r | Source code |
| .legend_oma_size | Source code |
| .levenshtein_dist_r | Source code |
| .log1pexp | Source code |
| .lp_adamic_adar | Source code |
| .lp_build_consensus | Source code |
| .lp_build_predictions | Source code |
| .lp_common_neighbors | Source code |
| .lp_compute_ap | Source code |
| .lp_compute_auc | Source code |
| .lp_jaccard | Source code |
| .lp_katz | Source code |
| .lp_parse_input | Source code |
| .lp_preferential_attachment | Source code |
| .lp_resource_allocation | Source code |
| .make_simplicial_complex | Source code |
| .mgm_cond_indicator | Source code |
| .mgm_estimate | Source code |
| .mgm_estimate_moderated | Source code |
| .mgm_int_mag | Source code |
| .mgm_main_mag | Source code |
| .mlvar_augment_data | Source code |
| .mlvar_prepare_data | Source code |
| .mmm_decode_int_data | Source code |
| .mmm_em | Source code |
| .mmm_init_kmeans | Source code |
| .mmm_quality | Source code |
| .mmm_softmax_mstep_fast | Source code |
| .mogen_count_kgrams | Source code |
| .mogen_layer_dof | Source code |
| .mogen_log_likelihood | Source code |
| .mogen_marginal | Source code |
| .mogen_transition_matrix | Source code |
| .mpt_extract_P | Source code |
| .mpt_full | Source code |
| .mpt_stationary | Source code |
| .normalize_clusters | Source code |
| .onLoad | Source code |
| .osa_dist_r | Source code |
| .parse_time | Source code |
| .permutation_association | Source code |
| .permutation_transition | Source code |
| .pivot_wide_to_long | Source code |
| .plot_mmm_posterior | Source code |
| .postprocess_counts | Source code |
| .precision_to_pcor | Source code |
| .precompute_per_sequence | Source code |
| .precompute_per_sequence_wide | Source code |
| .prepare_association_input | Source code |
| .prepare_ising_input | Source code |
| .print_covariate_profiles | Source code |
| .process_weights | Man page Source code |
| .qgram_dist_r | Source code |
| .qgram_matrix_tdm | Source code |
| .register_builtin_estimators | Source code |
| .reliability_association | Source code |
| .reliability_transition | Source code |
| .resolve_codes | Source code |
| .resolve_covariates | Source code |
| .resolve_method_alias | Source code |
| .row_order | Source code |
| .run_covariate_analysis | Source code |
| .sc_extract_matrix | Source code |
| .sc_plot_heatmap | Source code |
| .sc_plot_pyramid | Source code |
| .sc_theme | Source code |
| .scale_matrix | Source code |
| .select_ebic | Source code |
| .select_ebic_from_path | Source code |
| .select_state_cols | Source code |
| .sequence_distance | Source code |
| .sequence_plot_heatmap | Source code |
| .sequence_plot_index | Source code |
| .split_half_metrics | Source code |
| .standardize_long | Source code |
| .state_palette | Source code |
| .symmetrize_ising | Source code |
| .tick_positions | Source code |
| .title_line | Source code |
| .validate_cols | Source code |
| .wi2net | Source code |
| .wrap_netobject | Source code |
| .wtna_auto_detect_codes | Source code |
| .wtna_compute_by_actor | Source code |
| .wtna_compute_weights | Source code |
| .wtna_cooccurrence | Source code |
| .wtna_finalize | Source code |
| .wtna_initial_probs | Source code |
| .wtna_transitions | Source code |
| FUN | Source code Source code Source code |
| Nestimate | Man page |
| Nestimate-package | Man page |
| action_to_onehot | Man page Source code |
| ai_long | Man page |
| as_tna | Man page Source code |
| as_tna.default | Man page Source code |
| as_tna.mcml | Man page Source code |
| association_rules | Man page Source code |
| betti_numbers | Man page Source code |
| boot_glasso | Man page Source code |
| bootstrap_network | Man page Source code |
| build_atna | Man page Source code |
| build_clusters | Man page Source code |
| build_cna | Man page Source code |
| build_cor | Man page Source code |
| build_ftna | Man page Source code |
| build_gimme | Man page Source code |
| build_glasso | Man page Source code |
| build_hon | Man page Source code |
| build_honem | Man page Source code |
| build_hypa | Man page Source code |
| build_ising | Man page Source code |
| build_mcml | Man page Source code |
| build_mlvar | Man page Source code |
| build_mmm | Man page Source code |
| build_mogen | Man page Source code |
| build_network | Man page Source code |
| build_pcor | Man page Source code |
| build_simplicial | Man page Source code |
| build_tna | Man page Source code |
| centrality | Source code |
| centrality.cograph_network | Source code |
| centrality.mcml | Source code |
| centrality.netobject | Source code |
| centrality.netobject_group | Source code |
| centrality_stability | Man page Source code |
| chatgpt_srl | Man page |
| check_val_in_range | Man page Source code |
| cluster_mmm | Man page |
| cluster_network | Man page |
| cluster_summary | Man page Source code |
| codes_to_char | Source code |
| coefs | Man page Source code |
| coefs.default | Man page Source code |
| coefs.net_mlvar | Man page Source code |
| compare_mmm | Man page Source code |
| condition_moderated | Source code |
| convert_sequence_format | Man page Source code |
| cooccurrence | Man page Source code |
| data_conversion | Man page |
| distribution_plot | Man page Source code |
| estimate_network | Man page Source code |
| euler_characteristic | Man page Source code |
| evaluate_links | Man page Source code |
| extract_edges | Man page Source code |
| extract_initial_probs | Man page Source code |
| extract_transition_matrix | Man page Source code |
| extraction | Man page |
| frequencies | Man page Source code |
| get_estimator | Man page Source code |
| group_regulation_long | Man page |
| human_long | Man page |
| learning_activities | Man page |
| list_estimators | Man page Source code |
| long-data | Man page |
| long_to_wide | Man page Source code |
| markov_stability | Man page Source code |
| mogen_transitions | Man page Source code |
| nct | Man page Source code |
| net_aggregate_weights | Man page Source code |
| net_centrality | Man page Source code |
| network_reliability | Man page Source code |
| passage_time | Man page Source code |
| path_counts | Man page Source code |
| pathways | Man page Source code |
| pathways.net_association_rules | Man page Source code |
| pathways.net_hon | Man page Source code |
| pathways.net_hypa | Man page Source code |
| pathways.net_link_prediction | Man page Source code |
| pathways.net_mogen | Man page Source code |
| pathways.netobject | Man page Source code |
| permutation | Man page Source code |
| persistent_homology | Man page Source code |
| plot.boot_glasso | Man page Source code |
| plot.mcml | Man page Source code |
| plot.mmm_compare | Man page Source code |
| plot.net_association_rules | Man page Source code |
| plot.net_clustering | Man page Source code |
| plot.net_gimme | Man page Source code |
| plot.net_honem | Man page Source code |
| plot.net_link_prediction | Man page Source code |
| plot.net_markov_stability | Man page Source code |
| plot.net_mmm | Man page Source code |
| plot.net_mogen | Man page Source code |
| plot.net_mpt | Man page Source code |
| plot.net_reliability | Man page Source code |
| plot.net_sequence_comparison | Man page Source code |
| plot.net_stability | Man page Source code |
| plot.persistent_homology | Man page Source code |
| plot.q_analysis | Man page Source code |
| plot.simplicial_complex | Man page Source code |
| predict_links | Man page Source code |
| predictability | Man page Source code |
| predictability.netobject | Man page Source code |
| predictability.netobject_group | Man page Source code |
| predictability.netobject_ml | Man page Source code |
| prepare | Man page Source code |
| prepare_for_tna | Man page Source code |
| prepare_onehot | Man page Source code |
| print.boot_glasso | Man page Source code |
| print.mcml | Man page Source code |
| print.mmm_compare | Man page Source code |
| print.nestimate_data | Man page Source code |
| print.net_association_rules | Man page Source code |
| print.net_bootstrap | Man page Source code |
| print.net_bootstrap_group | Man page Source code |
| print.net_clustering | Man page Source code |
| print.net_gimme | Man page Source code |
| print.net_hon | Man page Source code |
| print.net_honem | Man page Source code |
| print.net_hypa | Man page Source code |
| print.net_link_prediction | Man page Source code |
| print.net_markov_stability | Source code |
| print.net_mlvar | Man page |
| print.net_mmm | Man page Source code |
| print.net_mogen | Man page Source code |
| print.net_mpt | Source code |
| print.net_nct | Man page Source code |
| print.net_permutation | Man page Source code |
| print.net_permutation_group | Man page Source code |
| print.net_reliability | Man page Source code |
| print.net_sequence_comparison | Man page Source code |
| print.net_stability | Man page Source code |
| print.netobject | Man page Source code |
| print.netobject_group | Man page Source code |
| print.netobject_ml | Man page Source code |
| print.persistent_homology | Man page Source code |
| print.q_analysis | Man page Source code |
| print.simplicial_complex | Man page Source code |
| print.summary.net_mpt | Source code |
| print.wtna_boot_mixed | Man page Source code |
| print.wtna_mixed | Man page Source code |
| q_analysis | Man page Source code |
| register_estimator | Man page Source code |
| remove_estimator | Man page Source code |
| safe_mean | Man page Source code |
| safe_median | Man page Source code |
| safe_sd | Man page Source code |
| sequence_compare | Man page Source code |
| sequence_plot | Man page Source code |
| simplicial_degree | Man page Source code |
| srl_strategies | Man page |
| state_frequencies | Man page Source code |
| summary.boot_glasso | Man page Source code |
| summary.mcml | Man page Source code |
| summary.net_association_rules | Man page Source code |
| summary.net_bootstrap | Man page Source code |
| summary.net_bootstrap_group | Man page Source code |
| summary.net_clustering | Man page Source code |
| summary.net_gimme | Man page Source code |
| summary.net_hon | Man page Source code |
| summary.net_honem | Man page Source code |
| summary.net_hypa | Man page Source code |
| summary.net_link_prediction | Man page Source code |
| summary.net_markov_stability | Source code |
| summary.net_mlvar | Man page |
| summary.net_mmm | Man page Source code |
| summary.net_mogen | Man page Source code |
| summary.net_mpt | Man page Source code |
| summary.net_permutation | Man page Source code |
| summary.net_permutation_group | Man page Source code |
| summary.net_sequence_comparison | Man page Source code |
| summary.net_stability | Man page Source code |
| summary.wtna_boot_mixed | Man page Source code |
| trajectories | Man page |
| utils | Man page |
| verify_simplicial | Man page Source code |
| wide_to_long | Man page Source code |
| wtna | Man page Source code |
