API for Nestimate
Network Estimation, Bootstrap, and Higher-Order Analysis

Global functions
.abbrev_dissimilarity	Source code
.abbrev_method	Source code
.abbreviate_states	Source code
.aggregate_metadata	Source code
.align_cluster_membership	Source code
.align_filtration	Source code
.apply_compare_scaling	Source code
.apply_node_labels	Source code
.apply_scaling	Source code
.ar_empty_result	Source code
.ar_generate_candidates	Source code
.ar_generate_rules	Source code
.ar_parse_input	Source code
.ar_transactions_to_matrix	Source code
.as_net_centrality_frame	Source code
.as_netobject	Source code
.attach_mmm_clustering	Source code
.auto_choice_type	Source code
.auto_detect_clusters	Source code
.auto_legend_size	Source code
.bayes_beta_ci	Source code
.bayes_compare_edge_betweenness	Source code
.betti_curve_from_pairs	Source code
.betweenness	Source code
.bg_build_edge_names	Source code
.bg_case_drop	Source code
.bg_centrality_diff_test	Source code
.bg_compute_centrality	Source code
.bg_cs_coefficient	Source code
.bg_cs_label	Source code
.bg_edge_diff_test	Source code
.bg_estimate_once	Source code
.bg_find_selected_lambda	Source code
.bg_plot_centrality_diff	Source code
.bg_plot_edge_diff	Source code
.bg_plot_edges	Source code
.bg_plot_inclusion	Source code
.bg_plot_stability	Source code
.bg_threshold_network	Source code
.bg_upper_tri_indices	Source code
.bootstrap_association	Source code
.bootstrap_transition	Source code
.bottleneck_feasible	Source code
.bottleneck_finite	Source code
.bottleneck_one_dim	Source code
.bron_kerbosch_all	Source code
.build_bayes_summary	Source code
.build_bootstrap_summary	Source code
.build_cluster_lookup	Source code
.build_from_transitions	Source code
.build_mcml_edgelist	Source code
.build_mcml_sequence	Source code
.build_pairs_long	Source code
.build_pairs_wide	Source code
.build_permutation_centralities	Source code
.build_permutation_summary	Source code
.build_qgram_tdm	Source code
.build_simplicial_clique	Source code
.build_simplicial_pathway	Source code
.calculate_cs	Source code
.canonicalize_build_network_params	Source code
.centrality_all_measures	Source code
.centrality_builtin_measures	Source code
.centrality_canonical_measure	Source code
.centrality_default_measures	Source code
.centrality_drop_zero	Source code
.centrality_line_plot	Source code
.centrality_measure_palette	Source code
.centrality_plot_data	Source code
.centrality_profile_data	Source code
.centrality_state_factor	Source code
.clean_states	Source code
.closeness	Source code
.cluster_choice_check_digits	Source code
.cluster_choice_check_unused_dots	Source code
.cluster_choice_row	Source code
.cluster_diag_check_unused_dots	Source code
.cluster_table_lines	Source code
.co_compute_matrix	Source code
.co_detect_format	Source code
.co_normalize	Source code
.co_parse_binary	Source code
.co_parse_delimited	Source code
.co_parse_list	Source code
.co_parse_long	Source code
.co_parse_multi_delimited	Source code
.co_parse_wide	Source code
.co_transactions_to_matrix	Source code
.coerce_label_map	Source code
.coerce_sequence_input	Source code
.collapse_states_to_groups	Source code
.compare_centralities	Source code
.compare_impl	Source code
.compare_scaling_names	Source code
.compute_betti	Source code
.compute_bootstrap_stats	Source code
.compute_centralities	Source code
.compute_cluster_profiles	Source code
.compute_initial_probs	Source code
.compute_lambda_path	Source code
.cosine_dist_r	Source code
.cosine_matrix_tdm	Source code
.count_attention_long	Source code
.count_attention_wide	Source code
.count_components	Source code
.count_cooccurrence_long	Source code
.count_cooccurrence_wide	Source code
.count_transitions	Source code
.count_transitions_long	Source code
.count_transitions_wide	Source code
.covariate_chisq	Source code
.covariate_logit	Source code
.cs_absorption	Source code
.cs_class_period	Source code
.cs_extract_patterns	Source code
.cs_gcd	Source code
.cs_hitting	Source code
.cs_parse_input	Source code
.cs_pattern_statistic	Source code
.cs_reachability	Source code
.cs_scc	Source code
.data_bearing_class	Source code
.decompose_multilevel	Source code
.detect_mcml_input	Source code
.detect_separation_risk	Source code
.diffusion_centrality	Source code
.dirichlet_rows	Source code
.dissimilarity_matrix_r	Source code
.dissimilarity_matrix_stringdist	Source code
.distance_correlation	Source code
.dl_dist_r	Source code
.draw_legend_in_oma	Source code
.draw_state_freq_plot	Source code
.edge_betweenness	Source code
.edge_betweenness_source_net	Source code
.encode_sequences	Source code
.encode_states	Source code
.estimator_attention	Source code
.estimator_co_occurrence	Source code
.estimator_cor	Source code
.estimator_frequency	Source code
.estimator_glasso	Source code
.estimator_ising	Source code
.estimator_mgm	Source code
.estimator_pcor	Source code
.estimator_relative	Source code
.estimator_wtna	Source code
.estimator_wtna_core	Source code
.expand_all	Source code
.expand_to_faces	Source code
.extract_edges_from_matrix	Source code
.extract_seqplot_input	Source code
.extract_sequence_data	Source code
.fc_from_filtered_complex	Source code
.filter_clique_complex	Source code
.filter_vr_complex	Source code
.find_all_cliques	Source code
.first_state_distribution	Source code
.floyd_warshall_sp	Source code
.fmt_centrality	Source code
.fmt_edgelist	Source code
.fmt_follows	Source code
.fmt_frequency	Source code
.fmt_onehot	Source code
.fmt_size_pct	Source code
.format_metric_values	Source code
.format_value_label	Source code
.freeman_degree_centralization	Source code
.freq_count_states	Source code
.freq_df_htna	Source code
.freq_df_mcml	Source code
.freq_df_netobject	Source code
.freq_df_netobject_group	Source code
.freq_one_group	Source code
.geom_fit_label	Source code
.get_qgram_r	Source code
.gimme_build_syntax	Source code
.gimme_extract_results	Source code
.gimme_find_weakest	Source code
.gimme_fit_and_mi	Source code
.gimme_fit_and_z	Source code
.gimme_fit_final	Source code
.gimme_fit_lavaan	Source code
.gimme_ind_forward_search	Source code
.gimme_individual_search	Source code
.gimme_plot_matrix	Source code
.gimme_prepare_data	Source code
.gimme_prune_paths	Source code
.gimme_select_path	Source code
.gimme_stabilize	Source code
.gimme_test_weights	Source code
.glasso_fit	Source code
.glasso_kkt_violation	Source code
.glasso_lasso_column	Source code
.glassopath_fit	Source code
.hamming_dist_r	Source code
.hamming_matrix_outer	Source code
.hg_extract_adj	Source code
.hg_tensor_power_iter	Source code
.ho_cograph_fields	Source code
.hon_add_to_rules	Source code
.hon_assemble_output	Source code
.hon_build_distributions	Source code
.hon_build_network	Source code
.hon_build_observations	Source code
.hon_build_source_cache	Source code
.hon_decode	Source code
.hon_encode	Source code
.hon_extend_rule	Source code
.hon_extract_rules	Source code
.hon_get_extensions	Source code
.hon_graph_to_edgelist	Source code
.hon_key_len	Source code
.hon_kld	Source code
.hon_kld_threshold	Source code
.hon_parse_input	Source code
.hon_rewire	Source code
.hon_rewire_tails	Source code
.hon_sequence_to_node	Source code
.honem_neighborhood_matrix	Source code
.honem_svd	Source code
.honem_transition_matrix	Source code
.honp_add_to_rules	Source code
.honp_build_order1	Source code
.honp_extend_observation	Source code
.honp_extend_rule	Source code
.honp_extend_source_fast	Source code
.honp_extract_rules	Source code
.honp_max_divergence	Source code
.hypa_compute_scores	Source code
.hypa_fit_xi	Source code
.hypa_one_order	Source code
.interpret_cramers_v	Source code
.is_data_bearing	Source code
.is_essential	Source code
.is_weakly_connected	Source code
.ising_nodewise_ebic	Source code
.jaccard_dist_r	Source code
.jaccard_matrix_tdm	Source code
.jaro_dist_r	Source code
.jw_dist_r	Source code
.kuhn_match_size	Source code
.lcs_dist_r	Source code
.legend_layer	Source code
.legend_oma_size	Source code
.legend_theme	Source code
.levenshtein_dist_r	Source code
.log1pexp	Source code
.lp_adamic_adar	Source code
.lp_build_consensus	Source code
.lp_build_predictions	Source code
.lp_common_neighbors	Source code
.lp_compute_ap	Source code
.lp_compute_auc	Source code
.lp_jaccard	Source code
.lp_katz	Source code
.lp_parse_input	Source code
.lp_preferential_attachment	Source code
.lp_resource_allocation	Source code
.magdiff_circular	Source code
.magdiff_compute	Source code
.magdiff_minmax	Source code
.magdiff_ramp	Source code
.magdiff_rank_minmax	Source code
.magdiff_rescale_to	Source code
.magdiff_stacked	Source code
.magnitude_density_plot	Source code
.make_simplicial_complex	Source code
.matrix_to_long_df	Source code
.mcml_check_unused_dots	Source code
.mcml_dist_plot	Source code
.mcml_grouped_breaks	Source code
.mcml_has_time_step_names	Source code
.mcml_index_plot	Source code
.mcml_layer	Source code
.mcml_mat_long	Source code
.mcml_seq_channels	Source code
.mcml_seq_palettes	Source code
.mgm_cond_indicator	Source code
.mgm_estimate	Source code
.mgm_estimate_moderated	Source code
.mgm_int_mag	Source code
.mgm_main_mag	Source code
.mlvar_augment_data	Source code
.mlvar_prepare_data	Source code
.mmm_compare_check_unused_dots	Source code
.mmm_component_warnings	Source code
.mmm_decode_int_data	Source code
.mmm_em	Source code
.mmm_init_kmeans	Source code
.mmm_quality	Source code
.mmm_softmax_mstep_fast	Source code
.mogen_count_kgrams	Source code
.mogen_layer_dof	Source code
.mogen_log_likelihood	Source code
.mogen_marginal	Source code
.mogen_transition_matrix	Source code
.mosaic_add_group_strips	Source code
.mosaic_count_or_stop	Source code
.mosaic_facet_plot	Source code
.mosaic_flat_check_args	Source code
.mosaic_flat_draw	Source code
.mosaic_panels	Source code
.mosaic_perm_stdres	Source code
.mosaic_plot_check_unused_dots	Source code
.mosaic_plot_impl	Source code
.mosaic_plot_tab	Source code
.mosaic_rect_data	Source code
.mosaic_residual_breaks	Source code
.mosaic_residual_limits	Source code
.mosaic_weights_or_stop	Source code
.mosaic_y_scale	Source code
.mot_extract_tuples	Source code
.mot_g2	Source code
.mot_g2_one_w	Source code
.mot_permute_null	Source code
.mpt_extract_P	Source code
.mpt_full	Source code
.mpt_normalize_rows	Source code
.mpt_stationary	Source code
.net_clustering_check_digits	Source code
.net_clustering_check_unused_dots	Source code
.net_mmm_check_digits	Source code
.net_mmm_check_unused_dots	Source code
.network_similarity	Source code
.new_state_freq	Source code
.normalize_clusters	Source code
.onLoad	Source code
.order_states	Source code
.osa_dist_r	Source code
.param_get	Source code
.parse_time	Source code
.pc_apply_weighting	Source code
.pc_average_macro	Source code
.pc_block_macro	Source code
.pc_composites	Source code
.pc_cor_matrix	Source code
.pc_estimate	Source code
.pc_fa_loadings	Source code
.pc_fa_minres	Source code
.pc_fa_paf	Source code
.pc_first_pc	Source code
.pc_network_loadings	Source code
.pc_normalize_clusters	Source code
.pc_rv_coefficient	Source code
.pd_entropy	Source code
.pd_extract_data	Source code
.pd_kgram_counts	Source code
.pd_kl	Source code
.pd_split_kgram	Source code
.per_cluster_within_dist	Source code
.perm_cent_diff_mat	Source code
.perm_centralities_mat	Source code
.permutation_association	Source code
.permutation_edge_betweenness	Source code
.permutation_transition	Source code
.persistence_pairs_z2	Source code
.ph_as_diagram	Source code
.pivot_wide_to_long	Source code
.plot_choice_bars	Source code
.plot_choice_facet	Source code
.plot_choice_heatmap	Source code
.plot_choice_lines	Source code
.plot_choice_tradeoff	Source code
.plot_comparison_all	Source code
.plot_comparison_diff_hist	Source code
.plot_comparison_heatmap	Source code
.plot_comparison_scatter	Source code
.plot_comparison_weight_dist	Source code
.plot_marimekko_hierarchical	Source code
.plot_mmm_posterior	Source code
.plot_net_centrality_delta	Source code
.plot_net_centrality_delta_multi	Source code
.plot_net_centrality_group_profile	Source code
.plot_net_centrality_heatmap	Source code
.plot_net_centrality_profile	Source code
.plot_per_facet_grid	Source code
.plot_state_bars	Source code
.plot_state_freq_check_unused_dots	Source code
.plot_state_frequencies_impl	Source code
.plot_treemap_panels	Source code
.postprocess_counts	Source code
.precision_to_pcor	Source code
.precompute_per_sequence	Source code
.precompute_per_sequence_onehot	Source code
.precompute_per_sequence_wide	Source code
.prepare_association_input	Source code
.prepare_ising_input	Source code
.prepare_sequence_wide	Source code
.print_covariate_profiles	Source code
.process_weights	Source code
.qgram_dist_r	Source code
.qgram_matrix_tdm	Source code
.range01_tna	Source code
.register_builtin_estimators	Source code
.reliability_association	Source code
.reliability_transition	Source code
.render_freq	Source code
.require_type_supported	Source code
.resampling_transition_data	Source code
.resolve_codes	Source code
.resolve_covariates	Source code
.resolve_measures	Source code
.resolve_method_alias	Source code
.row_order	Source code
.rsp_betweenness	Source code
.run_covariate_analysis	Source code
.rv_coefficient	Source code
.sc_extract_matrix	Source code
.sc_plot_heatmap	Source code
.sc_plot_pyramid	Source code
.sc_theme	Source code
.sc_threshold_adjacency	Source code
.scale_matrix	Source code
.select_ebic	Source code
.select_ebic_from_path	Source code
.select_state_cols	Source code
.sequence_distance	Source code
.sequence_plot_heatmap	Source code
.sequence_plot_index	Source code
.sequence_plot_mcml	Source code
.simple_treemap	Source code
.single_treemap_plot	Source code
.soft	Source code
.split_half_metrics	Source code
.standardize_long	Source code
.state_palette	Source code
.summary_metrics_from_weights	Source code
.symmetrize_ising	Source code
.te_row_entropy	Source code
.tick_positions	Source code
.title_line	Source code
.transition_matrix_input	Source code
.transition_resampling_n_sequences	Source code
.trim_codes	Source code
.trim_cut	Source code
.validate_auto_clusters	Source code
.validate_build_network_columns	Source code
.validate_build_network_params	Source code
.validate_cluster_partition	Source code
.validate_cols	Source code
.validate_label_map	Source code
.validate_mcml_matrix	Source code
.vb_builtin_statistics	Source code
.vb_random_distinct_pairs	Source code
.vertex_resample	Source code
.vocab_is_shared	Source code
.warn_single_sequence_confirmatory_network	Source code
.weighted_clustering	Source code
.weights_of	Source code
.wi2net	Source code
.wrap_netobject	Source code
.wtna_auto_detect_codes	Source code
.wtna_code_matrix	Source code
.wtna_compute_by_actor	Source code
.wtna_compute_weights	Source code
.wtna_cooccurrence	Source code
.wtna_finalize	Source code
.wtna_initial_probs	Source code
.wtna_transitions	Source code
FUN	Source code Source code Source code
Nestimate	Man page
Nestimate-package	Man page
`%\|\|%`	Source code Source code
action_to_onehot	Man page Source code
actor_endpoints	Man page Source code
ai_long	Man page
as.data.frame.net_cluster_diagnostics	Man page Source code
as.data.frame.state_freq	Man page Source code
as_htna	Man page Source code
as_htna.default	Man page Source code
as_htna.mcml	Man page Source code
as_netdifference	Man page Source code
as_netdifference.default	Man page Source code
as_netdifference.net_bayes	Man page Source code
as_netdifference.netdifference	Man page Source code
as_netobject	Man page Source code
as_netobject.cograph_network	Man page Source code
as_netobject.default	Man page Source code
as_netobject.netobject	Man page Source code
as_netobject.psychnet	Man page Source code
as_networks	Man page Source code
as_networks.default	Man page Source code
as_networks.mcml_pc	Man page Source code
as_tna	Man page Source code
as_tna.default	Man page Source code
as_tna.mcml	Man page Source code
association_rules	Man page Source code
bayes_compare	Man page Source code
betti_numbers	Man page Source code
bipartite_groups	Man page Source code
boot_glasso	Man page Source code
bootstrap_network	Man page Source code
bottleneck_distance	Man page Source code
build_atna	Man page Source code
build_clusters	Man page Source code
build_cna	Man page Source code
build_cor	Man page Source code
build_ftna	Man page Source code
build_gimme	Man page Source code
build_glasso	Man page Source code
build_hon	Man page Source code
build_honem	Man page Source code
build_hypa	Man page Source code
build_hypergraph	Man page Source code
build_ising	Man page Source code
build_mcml	Man page Source code
build_mcml_pc	Man page Source code
build_mlvar	Man page Source code
build_mmm	Man page Source code
build_mogen	Man page Source code
build_network	Man page Source code
build_pcor	Man page Source code
build_simplicial	Man page Source code
build_tna	Man page Source code
casedrop_reliability	Man page Source code
centrality	Source code
centrality.cograph_network	Source code
centrality.mcml	Source code
centrality.netobject	Source code
centrality.netobject_group	Source code
centrality_stability	Man page Source code
certainty	Man page Source code
chain_structure	Man page Source code
chatgpt_srl	Man page
check_val_in_range	Source code
clique_expansion	Man page Source code
cluster_choice	Man page Source code
cluster_data	Man page Source code
cluster_diagnostics	Man page Source code
cluster_diagnostics.default	Source code
cluster_diagnostics.net_clustering	Source code
cluster_diagnostics.net_mmm	Source code
cluster_diagnostics.net_mmm_clustering	Source code
cluster_diagnostics.netobject_group	Source code
cluster_mmm	Man page Source code
cluster_network	Man page
cluster_summary	Man page Source code
codes_to_char	Source code
coefs	Man page Source code
coefs.default	Man page Source code
coefs.net_mlvar	Man page Source code
compare_mmm	Man page Source code
compare_model	Man page Source code
compare_model.cograph_network	Man page Source code
compare_model.matrix	Man page Source code
compare_model.netobject	Man page Source code
compare_model.netobject_group	Man page Source code
condition_moderated	Source code
convert_sequence_format	Man page Source code
cooccurrence	Man page Source code
distribution_plot	Man page Source code
estimate_network	Man page Source code
euler_characteristic	Man page Source code
evaluate_links	Man page Source code
extract_edges	Man page Source code
extract_initial_probs	Man page Source code
extract_transition_matrix	Man page Source code
frequencies	Man page Source code
get_estimator	Man page Source code
group_regulation_long	Man page
human_long	Man page
hypergraph_centrality	Man page Source code
hypergraph_measures	Man page Source code
knit_print.nestimate_facet_list	Source code
knit_print.state_freq	Source code
learning_activities	Man page
list_estimators	Man page Source code
loading_stability	Man page Source code
long-data	Man page
long_to_wide	Man page Source code
magnitude_difference	Man page Source code
mark_first_state	Man page Source code
mark_terminal_state	Man page Source code
markov_order_test	Man page
markov_stability	Man page Source code
mogen_transitions	Man page Source code
mosaic_analysis	Man page Source code
mosaic_plot	Man page Source code
mosaic_plot.default	Man page Source code
mosaic_plot.htna	Man page Source code
mosaic_plot.matrix	Man page Source code
mosaic_plot.mcml	Man page Source code
mosaic_plot.netobject	Man page Source code
mosaic_plot.netobject_group	Man page Source code
mosaic_plot.table	Man page Source code
nct	Man page Source code
net_aggregate_weights	Man page Source code
net_centrality	Man page Source code
net_deprune	Man page
net_deprune.default	Man page
net_deprune.netobject	Man page
net_deprune.netobject_group	Man page
net_edge_betweenness	Man page Source code
net_edge_betweenness.default	Man page Source code
net_edge_betweenness.netobject	Man page Source code
net_edge_betweenness.netobject_group	Man page Source code
net_prune	Man page
net_prune.default	Man page
net_prune.netobject	Man page
net_prune.netobject_group	Man page
net_pruning_details	Man page
net_pruning_details.default	Man page
net_pruning_details.netobject	Man page
net_pruning_details.netobject_group	Man page
net_reprune	Man page
net_reprune.default	Man page
net_reprune.netobject	Man page
net_reprune.netobject_group	Man page
network_reliability	Man page Source code
passage_time	Man page Source code
path_counts	Man page Source code
path_dependence	Man page Source code
pathways	Man page Source code
pathways.net_association_rules	Man page Source code
pathways.net_hon	Man page Source code
pathways.net_hypa	Man page Source code
pathways.net_link_prediction	Man page Source code
pathways.net_mogen	Man page Source code
pathways.netobject	Man page Source code
permutation	Man page Source code
persistence_landscape	Man page Source code
persistent_homology	Man page Source code
plot.boot_glasso	Man page Source code
plot.chain_structure	Man page Source code
plot.cluster_choice	Man page Source code
plot.magnitude_difference	Man page Source code
plot.mcml_pc	Man page Source code
plot.mmm_compare	Man page Source code
plot.mosaic_analysis	Man page Source code
plot.net_association_rules	Man page Source code
plot.net_bayes	Man page Source code
plot.net_casedrop_reliability	Man page Source code
plot.net_casedrop_reliability_group	Man page Source code
plot.net_centrality	Man page Source code
plot.net_centrality_group	Man page Source code
plot.net_cluster_diagnostics	Man page Source code
plot.net_clustering	Man page Source code
plot.net_comparison	Man page Source code
plot.net_edge_betweenness	Man page Source code
plot.net_gimme	Man page Source code
plot.net_honem	Man page Source code
plot.net_markov_order	Man page
plot.net_markov_stability	Man page Source code
plot.net_mmm	Man page Source code
plot.net_mmm_clustering	Man page Source code
plot.net_mogen	Man page Source code
plot.net_mpt	Man page Source code
plot.net_path_dependence	Man page Source code
plot.net_reliability	Man page Source code
plot.net_sequence_comparison	Man page Source code
plot.net_stability	Man page Source code
plot.net_transition_entropy	Man page Source code
plot.net_vertex_bootstrap	Man page Source code
plot.net_vertex_comparison	Man page Source code
plot.pc_loading_stability	Man page Source code
plot.persistence_landscape	Man page Source code
plot.persistent_homology	Man page Source code
plot.q_analysis	Man page Source code
plot.simplicial_complex	Man page Source code
plot.state_freq	Man page Source code
plot_mosaic	Man page Source code
plot_state_frequencies	Man page Source code
plot_state_frequencies.default	Man page Source code
plot_state_frequencies.htna	Man page Source code
plot_state_frequencies.mcml	Man page Source code
plot_state_frequencies.netobject	Man page Source code
plot_state_frequencies.netobject_group	Man page Source code
predict_links	Man page Source code
predictability	Man page Source code
predictability.netobject	Man page Source code
predictability.netobject_group	Man page Source code
predictability.netobject_ml	Man page Source code
prepare	Man page Source code
prepare_for_tna	Man page Source code
prepare_onehot	Man page Source code
print.boot_glasso	Man page Source code
print.chain_structure	Man page Source code
print.chain_structure_group	Man page Source code
print.cluster_choice	Man page Source code
print.hypergraph_measures	Man page Source code
print.magnitude_difference	Man page Source code
print.mcml	Man page Source code
print.mcml_layer	Man page Source code
print.mcml_pc	Man page Source code
print.mmm_compare	Man page Source code
print.mosaic_analysis	Man page Source code
print.nestimate_data	Man page Source code
print.nestimate_facet_list	Source code
print.nestimate_facet_plot	Source code
print.net_association_rules	Man page Source code
print.net_bayes	Man page Source code
print.net_bayes_group	Man page Source code
print.net_bootstrap	Man page Source code
print.net_bootstrap_group	Man page Source code
print.net_casedrop_reliability	Man page Source code
print.net_casedrop_reliability_group	Man page Source code
print.net_certainty	Man page Source code
print.net_cluster_diagnostics	Man page Source code
print.net_clustering	Man page Source code
print.net_comparison	Source code
print.net_gimme	Man page Source code
print.net_hon	Man page Source code
print.net_honem	Man page Source code
print.net_hypa	Man page Source code
print.net_hypergraph	Man page Source code
print.net_link_prediction	Man page Source code
print.net_markov_order	Man page
print.net_markov_order_group	Man page
print.net_markov_stability	Source code
print.net_markov_stability_group	Man page Source code
print.net_mlvar	Man page
print.net_mmm	Man page Source code
print.net_mmm_clustering	Man page Source code
print.net_mogen	Man page Source code
print.net_mpt	Source code
print.net_mpt_group	Man page Source code
print.net_nct	Man page Source code
print.net_path_dependence	Man page Source code
print.net_permutation	Man page Source code
print.net_permutation_group	Man page Source code
print.net_pruning_details	Man page
print.net_reliability	Man page Source code
print.net_sequence_comparison	Man page Source code
print.net_stability	Man page Source code
print.net_stability_group	Man page Source code
print.net_transition_entropy	Man page Source code
print.net_transition_entropy_group	Man page Source code
print.net_vertex_bootstrap	Man page Source code
print.net_vertex_comparison	Man page Source code
print.netdifference	Man page Source code
print.netobject	Man page Source code
print.netobject_group	Man page Source code
print.netobject_ml	Man page Source code
print.pc_loading_stability	Man page Source code
print.persistence_landscape	Man page Source code
print.persistent_homology	Man page Source code
print.q_analysis	Man page Source code
print.simplicial_complex	Man page Source code
print.state_freq	Man page Source code
print.summary.net_casedrop_reliability_group	Man page Source code
print.summary.net_mpt	Source code
print.summary.net_path_dependence	Man page Source code
print.summary.net_transition_entropy	Man page Source code
print.summary.netobject	Source code
print.summary.netobject_group	Source code
print.summary_chain_structure	Man page Source code
print.tidy_covariates	Man page
print.wtna_boot_mixed	Man page Source code
print.wtna_mixed	Man page Source code
print.wtna_perm_mixed	Man page Source code
q_analysis	Man page Source code
register_estimator	Man page Source code
remove_estimator	Man page Source code
rename_models	Man page Source code
rename_models.default	Man page Source code
rename_models.netobject_group	Man page Source code
safe_mean	Source code
safe_median	Source code
safe_sd	Source code
sequence_compare	Man page Source code
sequence_plot	Man page Source code
simplicial_degree	Man page Source code
srl_strategies	Man page
state_distribution	Man page Source code
state_distribution.default	Man page Source code
state_distribution.htna	Man page Source code
state_distribution.mcml	Man page Source code
state_distribution.netobject	Man page Source code
state_distribution.netobject_group	Man page Source code
state_freq	Man page
state_frequencies	Man page Source code
subtract_networks	Man page Source code
summary.boot_glasso	Man page Source code
summary.chain_structure	Man page Source code
summary.chain_structure_group	Man page Source code
summary.cluster_choice	Man page Source code
summary.mcml	Man page Source code
summary.mcml_pc	Man page Source code
summary.mmm_compare	Man page Source code
summary.mosaic_analysis	Man page Source code
summary.nest_initial_probs	Man page Source code
summary.nest_transition_counts	Man page Source code
summary.nest_transition_matrix	Man page Source code
summary.net_association_rules	Man page Source code
summary.net_bayes	Man page Source code
summary.net_bayes_group	Man page Source code
summary.net_bootstrap	Man page Source code
summary.net_bootstrap_group	Man page Source code
summary.net_casedrop_reliability	Man page Source code
summary.net_casedrop_reliability_group	Man page Source code
summary.net_clustering	Man page Source code
summary.net_gimme	Man page Source code
summary.net_hon	Man page Source code
summary.net_honem	Man page Source code
summary.net_hypa	Man page Source code
summary.net_hypergraph	Man page Source code
summary.net_link_prediction	Man page Source code
summary.net_markov_order	Man page
summary.net_markov_stability	Source code
summary.net_mlvar	Man page
summary.net_mmm	Man page Source code
summary.net_mogen	Man page Source code
summary.net_mpt	Man page Source code
summary.net_nct	Man page Source code
summary.net_path_dependence	Man page Source code
summary.net_permutation	Man page Source code
summary.net_permutation_group	Man page Source code
summary.net_reliability	Man page Source code
summary.net_sequence_comparison	Man page Source code
summary.net_stability	Man page Source code
summary.net_stability_group	Man page Source code
summary.net_transition_entropy	Man page Source code
summary.net_vertex_bootstrap	Man page Source code
summary.net_vertex_comparison	Man page Source code
summary.netobject	Man page Source code
summary.netobject_group	Man page Source code
summary.wtna_boot_mixed	Man page Source code
summary.wtna_perm_mixed	Man page Source code
trajectories	Man page
transition_entropy	Man page Source code
validate_netobject	Man page Source code
verify_simplicial	Man page Source code
vertex_bootstrap	Man page Source code
vertex_compare	Man page Source code
wide_to_long	Man page Source code
wtna	Man page Source code