View source: R/LCC_Histogram.R
Histogram_LCC | R Documentation |
Plots the histogram to evaluate the significance of the Largest Connected Component (LCC).
Histogram_LCC(LCC_L, Name = NULL)
LCC_L |
an output from the function LCC_Significance or LCC_Bipartide |
Name |
title of the plot |
An Histogram of the simulated LCC, and a red line of the actual LCC.
set.seed(666) net = data.frame( Node.1 = sample(LETTERS[1:15], 15, replace = TRUE), Node.2 = sample(LETTERS[1:10], 15, replace = TRUE)) net$value = 1 net = CoDiNA::OrderNames(net) net = unique(net) g <- igraph::graph_from_data_frame(net, directed = FALSE ) targets = c("N", "A", "I", "F") LCC_Out = LCC_Significance(N = 1000, Targets = targets, G = g, bins = 5, min_per_bin = 2) # in a real interactome, please use the default Histogram_LCC(LCC_Out, "Example")
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