Modules: Example Module Dataset

In NetWeaver: Graphic Presentation of Complex Genomic and Network Data Analysis

Description

This example dataset and sample code illustrate the use of NetWeaver to visualize the complex features of gene coexpression network modules.

Usage

data(Modules)

Details

This dataset contains a data.frame called Modules. Each row is a module, with the module id in the first column. The second column is ranking score. The next 4 columns are coefficients of module-trait correlations. The rest columns are P values of enrichment for various gene signatures. The sample R code shows a pipeline for visualizing the module feature data using a circos style plot.

Author(s)

Minghui Wang <[e-mail]>, Bin Zhang <[e-mail]>

See Also

rc.initialize

Examples

## Not run: 
#see a tutorial for how to plot this dataset
vignette("netweaver")

## End(Not run)

NetWeaver documentation built on May 2, 2019, 11:26 a.m.