ODM2office: ODM2office

In ODMconverter: Tools to Convert ODM Files

Description

ODM2office transforms an ODM file into office format. Supported formats are csv-files, txt-files (tab-separated) and xlsx-files (Microsoft Excel).
Input: CDISC ODM format (Version 1.3; see examples)
Output: Office file with study header, itemgroups, items and codelists, including semantic annotation (see example).

Usage

 ODM2office( ODMfile="", filetype="" ) 

Arguments

ODMfile	Name of ODM file for conversion. File format: ODM version 1.3, see example. If omitted, file.choose()-dialog is started
filetype	Office file format for output. Valid formats: csv, txt and xlsx.

Author(s)

Martin Dugas ([e-mail])

References

Dugas M, Dugas-Breit S. Integrated data management for clinical studies: automatic transformation of data models with semantic annotations for principal investigators, data managers and statisticians.
PLoS One. 2014 Feb 28;9(2):e90492

Examples

ODM2office(ODMfile=file.path(path.package("ODMconverter"),"extdata","ODM-Test_S.0000.xml"), 
filetype="xlsx")

Example output

OpenJDK 64-Bit Server VM warning: Can't detect initial thread stack location - find_vma failed
ODMfile=/usr/local/lib/R/site-library/ODMconverter/extdata/ODM-Test_S.0000.xml
Output: ODM-Test_S.0000.xlsx 
ZoneInfo: /usr/share/javazi/ZoneInfoMappings (Permission denied)
Finished
Warning message:
system call failed: Cannot allocate memory 

ODMconverter documentation built on May 30, 2017, 7:44 a.m.