office2ODM: office2ODM

In ODMconverter: Tools to Convert ODM Files

Description

office2ODM transforms an office file into ODM format. Supported formats are csv-files, txt-files (tab-separated) and xlsx-files (Microsoft Excel).
Input: Office file with study header, itemgroups, items and codelists, including semantic annotation (see example). Output: CDISC ODM format (Version 1.3; see example)

Usage

 office2ODM( officefile="" ) 

Arguments

officefile

Name of office file for conversion. File format: csv, txt (tab-separated) or xlsx (Microsoft excel), see example. If omitted, file.choose()-dialog is started

Author(s)

Martin Dugas ([e-mail])

References

Dugas M, Dugas-Breit S. Integrated data management for clinical studies: automatic transformation of data models with semantic annotations for principal investigators, data managers and statisticians.
PLoS One. 2014 Feb 28;9(2):e90492

Examples

office2ODM(officefile=file.path(path.package("ODMconverter"),"extdata","ODM-Test.xlsx"))

Example output

OpenJDK 64-Bit Server VM warning: Can't detect initial thread stack location - find_vma failed
office2ODM (filetypes: csv, txt, xlsx)
officefile = /usr/local/lib/R/site-library/ODMconverter/extdata/ODM-Test.xlsx 
ZoneInfo: /usr/share/javazi/ZoneInfoMappings (Permission denied)
ZoneInfo: /usr/share/javazi/ZoneInfoMappings (Permission denied)
[1] "Generating ODM-Test_S.0000.xml"
Finished
Warning message:
system call failed: Cannot allocate memory 

ODMconverter documentation built on May 30, 2017, 7:44 a.m.