ORCME: Order Restricted Clustering for Microarray Experiments
Version 2.0.2

Provides clustering of genes with similar dose response (or time course) profiles. It implements the method described by Lin et al. (2012).

Browse man pages Browse package API and functions Browse package files

AuthorAdetayo Kasim, Martin Otava, Tobias Verbeke
Date of publication2015-07-31 12:12:01
MaintainerRudradev Sengupta <rudradev.sengupta@uhasselt.be>
LicenseGPL-3
Version2.0.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ORCME")

Man pages

doseData: Dose Data Example
geneData: Gene Expression Data Example
monotoneDirection: The monotone means under increasing/decreasing trend
ORCME: Order restricted clustering for dose-response trends in...
plotCluster: Plotting the gene specific profiles for one given cluster of...
plotIsomeans: Plot of the observed gene expression and the isotonic means...
plotLambda: Plot the variaty of the properties dependent on the...
resampleORCME: Estimation of the proportion of the heterogeneity in the...

Functions

EstimatedParameters Source code
ORCME Man page
SumofAbsValues Source code
SumofSquares Source code
clusterSumofAbsValues Source code
clusterSumofSquares Source code
doseData Man page
geneData Man page
isominmax Source code
isotonicmeans Source code
minmax Source code
monotoneDirection Man page
plotCluster Man page Source code
plotIsomeans Man page Source code
plotLambda Man page Source code
plotMeanSD Source code
resampleORCME Man page Source code

Files

NAMESPACE
NEWS
data
data/doseData.rda
data/geneData.rda
R
R/resampleORCME.R
R/plotIsomeans.R
R/plotLambda.R
R/ORCME.R
R/plotCluster.R
R/monotoneDirection.R
MD5
DESCRIPTION
man
man/geneData.Rd
man/resampleORCME.Rd
man/plotIsomeans.Rd
man/doseData.Rd
man/ORCME.Rd
man/plotLambda.Rd
man/monotoneDirection.Rd
man/plotCluster.Rd
ORCME documentation built on May 19, 2017, 9:07 a.m.