R/data.R

In OTclust: Mean Partition, Uncertainty Assessment, Cluster Validation and Visualization Selection for Cluster Analysis

#' Single cell gene visualization data from Pollen's paper
#'
#' A dataset containing the visualization coordinates and the true cluster labels of 301 cells.
#'
#' @format A list containing two components
#' \describe{
#'   \item{vis}{visualization coordinates of cells}
#'   \item{ref}{true labels of cells}
#' }
#' @source \url{https://www.nature.com/articles/nbt.2967}
"vis_pollen"

#' Single cell gene data from Yan's paper
#'
#' A dataset containing 124 cells with their 3840 genes.
#'
#' @format A matrix with 124 rows and 3840 variables
#' @source \url{https://www.nature.com/articles/nsmb.2660}
"YAN"

#' Simulated toy data
#'
#' A dataset containing 5000 samples and 2 features.
#'
#' @format A matrix with 5000 rows and 2 variables
"sim1"