Nothing
## ---- include = FALSE---------------------------------------------------------
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
## ----eval=FALSE---------------------------------------------------------------
# install.packages("OTrecod")
## ----results='hide',message=FALSE,warning=FALSE-------------------------------
library(OTrecod)
## ----eval=FALSE---------------------------------------------------------------
# # Install development version from GitHub
# devtools::install_github("otrecoding/OTrecod")
## ----results='hide',message=FALSE,warning=FALSE-------------------------------
# load("C:\\Users\\secr\\Desktop\\newpack\\datas_vignet2.RData")
data(ncds_14); data(ncds_5)
## ----summa--------------------------------------------------------------------
summary(ncds_14); summary(ncds_5)
## ----merg---------------------------------------------------------------------
merged_tab <- merge_dbs(ncds_14, ncds_5,
row_ID1 = 1, row_ID2 = 1,
NAME_Y = "GO90", NAME_Z = "RG91",
ordinal_DB1 = 3, ordinal_DB2 = 4,
impute = "MICE", R_MICE = 2,
seed_choice = 3023)
## ----summa2-------------------------------------------------------------------
head(merged_tab$DB_READY); dim(merged_tab$DB_READY)
## ----selec1-------------------------------------------------------------------
# ncds_14
sel_pred_GO90 <- select_pred(merged_tab$DB_READY,
Y = "Y", Z = "Z",
ID = 1 , OUT = "Y",
nominal = c(1:5,7), ordinal = 6,
RF = FALSE)
## ----selec2-------------------------------------------------------------------
# ncds_5
sel_pred_RG91 <- select_pred(merged_tab$DB_READY, Y = "Y", Z = "Z",
ID = 1, OUT = "Z",
nominal = c(1:5,7), ordinal = 6,
RF = FALSE)
## ----resel1-------------------------------------------------------------------
## ncds_14
sel_pred_GO90$collinear_PB$VCRAM
## ncds_5
sel_pred_RG91$collinear_PB$VCRAM
## ----resel2-------------------------------------------------------------------
## ncds_14
sel_pred_GO90$vcrm_OUTC_cat
## ncds_5
sel_pred_RG91$vcrm_OUTC_cat
## ----resel3-------------------------------------------------------------------
## ncds_14
sel_pred_GO90$vcrm_X_cat
## ncds_5
sel_pred_RG91$vcrm_X_cat
## ----readydata----------------------------------------------------------------
merged_fin = merged_tab$DB_READY[, -4]
head(merged_fin, 3)
## ----outc11-------------------------------------------------------------------
outc1 = OT_outcome(merged_fin, nominal = c(1:4), ordinal = 5:6,
dist.choice = "E", indiv.method = "sequential",
which.DB = "B")
## ----joint1-------------------------------------------------------------------
outj1 = OT_joint(merged_fin, nominal = 1:4, ordinal = 5:6,
dist.choice = "E", which.DB = "B")
## ----verif1-------------------------------------------------------------------
### For the model outc1
verif_outc1 = verif_OT(outc1, ordinal = FALSE,
stab.prob = TRUE, min.neigb = 5)
### For the model outj1
verif_outj1 = verif_OT(outj1, ordinal = FALSE,
stab.prob = TRUE, min.neigb = 5)
## ----verif2-------------------------------------------------------------------
### For the model outc1: Hellinger distance
verif_outc1$hell
### For the model outj1: Hellinger distance
verif_outj1$hell
## ----verif3-------------------------------------------------------------------
### For the model outc1: Hellinger distance
verif_outc1$res.prox
### For the model outj1: Hellinger distance
verif_outj1$res.prox
## ----verif4-------------------------------------------------------------------
### For the model outc1: Hellinger distance
verif_outc1$res.stab
### For the model outj1: Hellinger distance
verif_outj1$res.stab
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