OUwie: Analysis of Evolutionary Rates in an OU Framework

Share:

Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck-based Hansen models that allow the strength of selection and stochastic motion to vary across selective regimes.

Author
Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
Date of publication
2016-06-18 18:45:59
Maintainer
Jeremy Beaulieu <jbeaulieu@nimbios.org>
License
GPL (>= 2)
Version
1.50

View on CRAN

Man pages

Example
An example dataset
OUwie
Generalized Hansen models
OUwie.boot
Parametric bootstrap function
OUwie.fixed
Generalized Hansen model likelihood calculator
OUwie.joint
Joint optimization for multiple traits
OUwie.sim
Generalized Hansen model simulator
OUwie.slice
Generalized Hansen models with time slices

Files in this package

OUwie
OUwie/NAMESPACE
OUwie/data
OUwie/data/tworegime.rda
OUwie/data/sim.ex.rda
OUwie/R
OUwie/R/OUwie.sim.R
OUwie/R/pathLike.R
OUwie/R/OUwie.fixed.R
OUwie/R/expect.trendy.R
OUwie/R/OUwie.R
OUwie/R/hOUwie.R
OUwie/R/OUwie.slice.R
OUwie/R/OUwie.joint.R
OUwie/R/varcov.ou.R
OUwie/R/weight.mat.R
OUwie/R/OUwie.boot.R
OUwie/MD5
OUwie/DESCRIPTION
OUwie/man
OUwie/man/OUwie.boot.Rd
OUwie/man/OUwie.joint.Rd
OUwie/man/Example.Rd
OUwie/man/OUwie.fixed.Rd
OUwie/man/OUwie.Rd
OUwie/man/OUwie.slice.Rd
OUwie/man/OUwie.sim.Rd