API for OUwie
Analysis of Evolutionary Rates in an OU Framework
| Global functions | |
|---|---|
| DredgeCombinations | Source code |
| GetLikelihood | Source code |
| GetParameterPainting | Source code |
| GetShiftMap | Source code |
| GetShiftModel | Source code |
| GetThetas | Source code |
| MakeAgeTable | Source code |
| OUwie | Man page Source code |
| OUwie.anc | Man page Source code |
| OUwie.boot | Man page Source code |
| OUwie.contour | Man page Source code |
| OUwie.dredge | Man page Source code |
| OUwie.fixed | Man page Source code |
| OUwie.semifixed | Source code |
| OUwie.sim | Man page Source code |
| OptimizeDredgeLikelihood | Source code |
| add.stub.taxa.to.data | Source code |
| add.stub.taxon.to.data | Source code |
| anc.likelihood | Source code |
| attach.stub.taxa | Source code |
| attach.stub.taxon | Source code |
| check | Source code |
| check.identify | Man page Source code |
| check.identify.dredge | Source code |
| contourSearchOUwie | Source code |
| contourSearchPoints | Source code |
| expected.trendy | Source code |
| fix.kappa | Man page Source code |
| fix_lower | Source code |
| fix_upper | Source code |
| getMapFromNode | Source code |
| getOULik | Source code |
| getPathToRoot | Source code |
| mat.gen | Source code Source code Source code |
| ouwie.col.to.row.names | Source code |
| ouwie.row.names.to.col | Source code |
| plot.OUwie.anc | Source code |
| plot.OUwie.contour | Man page Source code |
| plot.OUwie.dredge | Source code |
| print.OUwie | Source code |
| print.OUwie.dredge | Source code |
| print.OUwie.fixed | Source code |
| quickVCV | Source code |
| trait | Man page |
| transformPhy | Source code |
| tree | Man page |
| tree.kappa | Source code |
| varcov.ou | Source code |
| weight.mat | Source code |
