Man pages for OUwie
Analysis of Evolutionary Rates in an OU Framework
| check.identify | A test of regime identifiability |
| dent_likelihood | Dents the likelihood surface This takes any values that are... |
| dent_propose | Propose new values This proposes new values using a normal... |
| dent_walk | Sample points from along a ridge This "dents" the likelihood... |
| Example | An example dataset |
| fix.kappa | Adjust tree for matrix condition |
| getModelAvgParams | Model average the parameter estimates over severl hOUwie... |
| getModelTable | Generate a table from a set of hOUwie models describing their... |
| getOUParamStructure | Generate a continuous model parameter structure |
| hOUwie | Fit a joint model of discrete and continuous characters via... |
| hOUwie.fixed | Fit a joint model of discrete and continuous characters via... |
| hOUwie.recon | Reconstruct the marginal probability of discrete node states... |
| hOUwie.sim | Simulate a discrete and continuous character following a... |
| hOUwie.thorough | Rerun a set of hOUwie models with the best mappings of the... |
| hOUwie.walk | Sample points from along a ridge for a hOUwie model |
| OUwie | Generalized Hansen models |
| OUwie.anc | Estimate ancestral states given a fitted OUwie model |
| OUwie.boot | Parametric bootstrap function |
| OUwie.contour | Generates data for contour plot of likelihood surface |
| OUwie.dredge | Generalized Detection of shifts in OU process |
| OUwie.fixed | Generalized Hansen model likelihood calculator |
| OUwie.format | Format data and tree for OUwie |
| OUwie.sim | Generalized Hansen model simulator |
| plot.dentist | Plot the dented samples This will show the univariate plots... |
| plot.OUwie.contour | Contour plot |
| print.dentist | Print dentist print summary of output from dent_walk |
| summary.dentist | Summarize dentist Display summary of output from dent_walk |
