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OmicNavigator: Open-Source Software for 'Omic' Data Analysis and Visualization
A tool for interactive exploration of the results from 'omics' experiments to facilitate novel discoveries from high-throughput biology. The software includes R functions for the 'bioinformatician' to deposit study metadata and the outputs from statistical analyses (e.g. differential expression, enrichment). These results are then exported to an interactive JavaScript dashboard that can be interrogated on the user's local machine or deployed online to be explored by collaborators. The dashboard includes 'sortable' tables, interactive plots including network visualization, and fine-grained filtering based on statistical significance.
Getting started
Browse package contents
Package details |
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| Author | Terrence Ernst [aut] (Web application), John Blischak [aut, cre] (ORCID: <https://orcid.org/0000-0003-2634-9879>), Paul Nordlund [aut] (Web application), Justin Moore [aut] (UpSet-related functions and web application), Joe Dalen [aut] (Barcode functionality and web application), Akshay Bhamidipati [aut] (Web application), Brett Engelmann [aut], Marco Curado [aut] (Improved plotting capabilities), Joe LoGrasso [aut] (Support for plotly), Elyse Geoffroy [ctb], AbbVie Inc. [cph, fnd] |
| Maintainer | John Blischak <jdblischak@gmail.com> |
| License | MIT + file LICENSE |
| Version | 1.16.0 |
| URL | https://github.com/abbvie-external/OmicNavigator |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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Try the OmicNavigator package in your browser
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