API for OmicNavigator
Open-Source Software for 'Omic' Data Analysis and Visualization
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| EnrichmentUpsetPlot | Source code |
| InferenceUpsetPlot | Source code |
| Mm.c2 | Man page |
| OmicNavigator | Man page |
| OmicNavigator-package | Man page |
| addAnnotations | Man page Source code |
| addAssays | Man page Source code |
| addBarcodes | Man page Source code |
| addElements | Source code |
| addEnrichments | Man page Source code |
| addEnrichmentsLinkouts | Man page Source code |
| addFeatures | Man page Source code |
| addMapping | Man page Source code |
| addMetaFeatures | Man page Source code |
| addMetaFeaturesLinkouts | Man page Source code |
| addModels | Man page Source code |
| addOverlaps | Man page Source code |
| addPlots | Man page Source code |
| addReports | Man page Source code |
| addResults | Man page Source code |
| addResultsLinkouts | Man page Source code |
| addSamples | Man page Source code |
| addTests | Man page Source code |
| basal.vs.lp | Man page |
| basal.vs.ml | Man page |
| buildPkg | Source code |
| c.onStudy | Source code |
| calc_overlap | Source code |
| calc_pairwise_overlaps | Source code |
| cam.BasalvsLP | Man page |
| cam.BasalvsML | Man page |
| capitalize | Source code |
| checkAnnotations | Source code |
| checkAssays | Source code |
| checkBarcodes | Source code |
| checkDescription | Source code |
| checkEnrichments | Source code |
| checkEnrichmentsLinkouts | Source code |
| checkFeatures | Source code |
| checkList | Source code |
| checkMaintainer | Source code |
| checkMaintainerEmail | Source code |
| checkMapping | Source code |
| checkMetaFeatures | Source code |
| checkMetaFeaturesLinkouts | Source code |
| checkModels | Source code |
| checkName | Source code |
| checkNamingConvention | Source code |
| checkOverlaps | Source code |
| checkPlots | Source code |
| checkReports | Source code |
| checkResults | Source code |
| checkResultsLinkouts | Source code |
| checkSamples | Source code |
| checkStudy | Source code |
| checkStudyMeta | Source code |
| checkTests | Source code |
| checkVersion | Source code |
| coerceColsToCharacter | Source code |
| combineListIntoTable | Source code |
| combineStudies | Man page Source code |
| combineStudiesPair | Source code |
| createPackage | Source code |
| createStudy | Man page Source code |
| createTextFiles | Source code |
| display | Source code |
| displayCharacter | Source code |
| displayDataFrame | Source code |
| displayList | Source code |
| enrichmentsToWide | Source code |
| exportAnnotations | Source code |
| exportAssays | Source code |
| exportBarcodes | Source code |
| exportElements | Source code |
| exportElementsWrite | Source code |
| exportEnrichments | Source code |
| exportEnrichmentsLinkouts | Source code |
| exportFeatures | Source code |
| exportMapping | Source code |
| exportMetaFeatures | Source code |
| exportMetaFeaturesLinkouts | Source code |
| exportModels | Source code |
| exportOverlaps | Source code |
| exportPlots | Source code |
| exportReports | Source code |
| exportResults | Source code |
| exportResultsLinkouts | Source code |
| exportSamples | Source code |
| exportStudy | Man page Source code |
| exportSummary | Source code |
| exportTests | Source code |
| faviconFunction | Source code |
| formatEnrichmentResults | Source code |
| getAnnotations | Man page Source code |
| getAssays | Man page Source code |
| getBarcodeData | Man page Source code |
| getBarcodes | Man page Source code |
| getDirectory | Source code |
| getElements | Source code |
| getElements.character | Source code |
| getElements.default | Source code |
| getElements.onStudy | Source code |
| getEnrichmentIntersection | Source code |
| getEnrichments | Man page Source code |
| getEnrichmentsIntersection | Man page Source code |
| getEnrichmentsLinkouts | Man page Source code |
| getEnrichmentsNetwork | Man page Source code |
| getEnrichmentsTable | Man page Source code |
| getEnrichmentsUpset | Man page Source code |
| getFavicons | Man page Source code |
| getFeatures | Man page Source code |
| getFiles | Source code |
| getInferenceIntersection | Source code |
| getInstalledStudies | Man page Source code |
| getLinkFeatures | Man page Source code |
| getMapping | Man page Source code |
| getMappingPlottingData | Source code |
| getMetaFeatures | Man page Source code |
| getMetaFeaturesLinkouts | Man page Source code |
| getMetaFeaturesTable | Man page Source code |
| getModels | Man page Source code |
| getNodeFeatures | Man page Source code |
| getOverlaps | Man page Source code |
| getPackageVersion | Man page Source code |
| getPlotFunction | Source code |
| getPlots | Man page Source code |
| getPlottingData | Man page Source code |
| getPrefix | Source code |
| getReportLink | Man page Source code |
| getReports | Man page Source code |
| getResults | Man page Source code |
| getResultsIntersection | Man page Source code |
| getResultsLinkouts | Man page Source code |
| getResultsTable | Man page Source code |
| getResultsUpset | Man page Source code |
| getSamples | Man page Source code |
| getTests | Man page Source code |
| getUpsetCols | Man page Source code |
| group | Man page |
| hasUniqueIdColumn | Source code |
| importStudy | Man page Source code |
| installApp | Man page Source code |
| installStudy | Man page Source code |
| isEmpty | Source code |
| isUrl | Source code |
| is_unique | Source code |
| lane | Man page |
| lcpm | Man page |
| listAllModels | Source code |
| listStudies | Man page Source code |
| pkgToStudy | Source code |
| plotStudy | Man page Source code |
| print.onStudy | Source code |
| readJson | Source code |
| readTable | Source code |
| removeStudy | Man page Source code |
| renameFile | Source code |
| resetPar | Source code |
| resetSearch | Source code |
| samplenames | Man page |
| sanitizeAnnotations | Source code |
| sanitizeAssays | Source code |
| sanitizeBarcodes | Source code |
| sanitizeEnrichments | Source code |
| sanitizeEnrichmentsLinkouts | Source code |
| sanitizeFeatures | Source code |
| sanitizeMapping | Source code |
| sanitizeMetaFeatures | Source code |
| sanitizeMetaFeaturesLinkouts | Source code |
| sanitizeModels | Source code |
| sanitizeOverlaps | Source code |
| sanitizePlots | Source code |
| sanitizeReports | Source code |
| sanitizeResults | Source code |
| sanitizeResultsLinkouts | Source code |
| sanitizeSamples | Source code |
| sanitizeTests | Source code |
| shared-add | Man page |
| shared-data | Man page |
| shared-get | Man page |
| shared-upset | Man page |
| startApp | Man page Source code |
| studyToPkg | Source code |
| summary.onStudy | Man page Source code |
| testAnnotations | Source code |
| testAssays | Source code |
| testBarcodes | Source code |
| testEnrichments | Source code |
| testEnrichmentsLinkouts | Source code |
| testFeatures | Source code |
| testMapping | Source code |
| testMetaFeatures | Source code |
| testMetaFeaturesLinkouts | Source code |
| testModels | Source code |
| testPlots | Source code |
| testReports | Source code |
| testResults | Source code |
| testResultsLinkouts | Source code |
| testSamples | Source code |
| testStudy | Source code |
| testStudyMeta | Source code |
| testStudyMinimal | Source code |
| testStudyNumeric | Source code |
| testTests | Source code |
| validateEnrichments | Source code |
| validateEnrichmentsLinkouts | Source code |
| validateMapping | Source code |
| validatePlots | Source code |
| validateResults | Source code |
| validateStudy | Man page Source code |
| warnIfNonCharacterCols | Source code |
| writeJson | Source code |
| writeTable | Source code |
