OutbreakTools
Basic Tools for the Analysis of Disease Outbreaks

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Vignettes
Functions
226
Source code
26
Man pages
30
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OutbreakTools: Basic Tools for the Analysis of Disease Outbreaks
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API

API for OutbreakTools
Basic Tools for the Analysis of Disease Outbreaks

Global functions
DNAbin-class Man page
DNAbinOrNULL Man page
DNAbinOrNULL-class Man page
DateOrNULL Man page
DateOrNULL-class Man page
FluH1N1pdm2009 Man page
HorseFlu Man page
HorseFluRaw Man page
JSON2obkData Man page Source code
OutbreakTools Man page
OutbreakTools-package Man page
POSIXctOrNULL Man page
POSIXctOrNULL-class Man page
ToyOutbreak Man page
ToyOutbreakRaw Man page
[,obkContacts,ANY,ANY-method Man page
[,obkContacts-method Man page
annotated.clado.build Source code
annotated.tree.build Source code
as.data.frame,obkContacts-method Man page
as.data.frame.obkContacts Man page
as.matrix,obkContacts-method Man page
as.matrix.obkContacts Man page
characterOrNULL Man page
characterOrNULL-class Man page
data.frameOrNULL Man page
data.frameOrNULL-class Man page
dna2uniqSequences Man page Source code
extract.string Source code
factorNULL Man page
factorNULL-class Man page
get.contacts Man page
get.contacts,obkContacts-method Man page
get.contacts,obkData-method Man page
get.contacts.obkContacts Man page
get.contacts.obkData Man page
get.context Man page
get.context,obkData-method Man page
get.context.obkData Man page
get.data Man page
get.data,obkData-method Man page
get.data.obkData Man page
get.dates Man page
get.dates,obkContacts-method Man page
get.dates,obkData-method Man page
get.dates,obkSequences-method Man page
get.dates.obkContacts Man page
get.dates.obkData Man page
get.dates.obkSequences Man page
get.dna Man page
get.dna,obkData-method Man page
get.dna,obkSequences-method Man page
get.dna.obkData Man page
get.dna.obkSequences Man page
get.id Man page
get.id,obkSequences-method Man page
get.incidence Man page
get.incidence,Date-method Man page
get.incidence,obkContacts-method Man page
get.incidence,obkData-method Man page
get.incidence,obkSequences-method Man page
get.incidence.Date Man page
get.incidence.obkContacts Man page
get.incidence.obkData Man page
get.incidence.obkSequences Man page
get.individuals Man page
get.individuals,obkContacts-method Man page
get.individuals,obkData-method Man page
get.individuals,obkSequences-method Man page
get.individuals.obkContacts Man page
get.individuals.obkData Man page
get.individuals.obkSequences Man page
get.locus Man page
get.locus,obkData-method Man page
get.locus,obkSequences-method Man page
get.locus.obkData Man page
get.locus.obkSequences Man page
get.ncontacts Man page
get.ncontacts,obkContacts-method Man page Man page
get.ncontacts,obkData-method Man page
get.ncontacts.obkContacts Man page Man page
get.ncontacts.obkData Man page
get.ncontext Man page
get.ncontext,obkData-method Man page
get.ncontext.obkData Man page
get.ndates Man page
get.ndates,obkContacts-method Man page
get.ndates,obkData-method Man page
get.ndates,obkSequences-method Man page
get.ndates.obkContacts Man page
get.ndates.obkData Man page
get.ndates.obkSequences Man page
get.nindividuals Man page
get.nindividuals,obkContacts-method Man page
get.nindividuals,obkData-method Man page
get.nindividuals,obkSequences-method Man page
get.nindividuals.obkContacts Man page
get.nindividuals.obkData Man page
get.nindividuals.obkSequences Man page
get.nlocus Man page
get.nlocus,obkData-method Man page
get.nlocus,obkSequences-method Man page
get.nlocus.obkData Man page
get.nlocus.obkSequences Man page
get.nrecords Man page
get.nrecords,obkData-method Man page
get.nrecords.obkData Man page
get.nsequences Man page
get.nsequences,obkData-method Man page
get.nsequences,obkSequences-method Man page
get.nsequences.obkData Man page
get.nsequences.obkSequences Man page
get.ntrees Man page
get.ntrees,obkData-method Man page
get.ntrees.obkData Man page
get.records Man page
get.records,obkData-method Man page
get.records.obkData Man page
get.sequences Man page
get.sequences,obkData-method Man page
get.sequences,obkSequences-method Man page
get.sequences.obkData Man page
get.sequences.obkSequences Man page
get.trees Man page
get.trees,obkData-method Man page
get.trees.obkData Man page
head,obkData-method Man page
head.obkData Man page
initialize,obkContacts-method Man page
initialize,obkData-method Man page
initialize,obkSequences-method Man page
initialize,uniqSequences-method Man page
integerOrNULL Man page
integerOrNULL-class Man page
listOrNULL Man page
listOrNULL-class Man page
make.individual.attributes Man page Source code
make.phylo Man page
make.phylo,obkData-method Man page
make.phylo.obkData Man page
make.sequence.attributes Man page Source code
make.tip.attributes Man page Source code
matrixOrNULL Man page
matrixOrNULL-class Man page
meltDateProof Source code
mportFromJSON Source code
multiPhylo-class Man page
multiPhyloOrNULL Man page
multiPhyloOrNULL-class Man page
network-class Man page
networkDynamic-class Man page
networkDynamicOrNetwork-class Man page
networkDynamicOrNetworkOrNULL-class Man page
nlineSummary Source code
numericOrNULL Man page
numericOrNULL-class Man page
obkContacts Man page
obkContacts-class Man page
obkContactsOrNULL Man page
obkContactsOrNULL-class Man page
obkData Man page
obkData-class Man page
obkSequences Man page
obkSequences-class Man page
obkSequencesOrNULL-class Man page
onAttach Source code
parse.traits Source code
parse.value Source code
phylo-class Man page
phylo2ggphy Man page Source code
phylofromtranstree Man page Source code
plot,obkContacts,ANY-method Man page
plot,obkContacts-method Man page
plot,obkData,ANY-method Man page
plot,obkData-method Man page
plot.obkContacts Man page
plot.obkData Man page
plotEpi Man page Source code
plotGeo Man page Source code
plotIndividualTimeline Man page Source code
plotggMST Man page Source code
plotggphy Man page Source code
print.obkContacts Man page
process.Date Source code
read.annotated.nexus Man page Source code
read.annotated.tree Man page Source code
resample Source code
restoreNumericType Source code
retrieveLabelsFromDataframe Source code
show,obkContacts-method Man page
show,obkData-method Man page
show,obkSequences-method Man page
show.obkContacts Man page
simuEpi Man page Source code
split.tree.names Source code
split.tree.traits Source code
strip.annotations Source code
subset,obkContacts-method Man page
subset,obkData-method Man page
subset,obkSequences-method Man page
subset.obkContacts Man page
subset.obkData Man page
subset.obkSequences Man page
summary,obkData-method Man page
summary.obkData Man page
tail,obkData-method Man page
tail.obkData Man page
uniqSequences Man page
uniqSequences-class Man page
OutbreakTools documentation built on Oct. 6, 2017, 1:03 a.m.

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