lcms3: a real MS dataset obtained from analyzing human sera

In OutlierDM: Outlier Detection for Multi-replicated High-throughput Data

Description

This data set consists of three-replicated LC/MS/MS data obtained from the laboratory of gaseous ion chemistry in department of chemistry, Korea University.

Usage

data(lcms3)

Format

a matrix for LCMS data, rows = peptides, columns = samples

Details

LC/MS/MS experiments were performed on a home-built ultrahigh-pressure dual on-line solid phase extraction/capillary reverse-phase liquid chromatography (DO-SPE/cRPLC) (Min et al., 2007) that was coupled to a Fourier transform ion cyclotron resonance (FT-ICR, LTQ-FT, Thermo, San Jose) mass spectrometer by means of a home built nanoESI interface.

Source

Min H-K, Hyung S-W, Shin J-W, et al. (2007). Ultrahigh-pressure dual online solid phase extraction/capillary reverse-phase liquid chromatography/tandem mass spectrometry (DO-SPE/cRPLC/MS/MS): A versatile separation platform for high-throughput and highly sensitive proteomic analyses. Electrophoresis 28:1012–1021.

Examples

  data(lcms3)
  str(lcms3)
  pairs(log2(lcms3), pch = 20, cex = .7)

OutlierDM documentation built on May 1, 2019, 7:58 p.m.