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Finds pairs of functional annotations or gene ontology (GO) terms that are enriched within a directed network (such as a gene regulatory network). This works with or without edge weights and includes visualizations (both as a network where the functions are nodes and as a heatmap). PAFway is an acronym for Pairwise Associations of Functional annotations in biological networks and pathWAYs.
Package details |
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Author | Daphne Ezer [aut, cre], Mahair Mahjoub [aut] |
Maintainer | Daphne Ezer <daphne.ezer@york.ac.uk> |
License | GPL (>= 2) |
Version | 0.1.3 |
Package repository | View on CRAN |
Installation |
Install the latest version of this package by entering the following in R:
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