PAFway: Pairwise Association of Functional Annotations

Finds pairs of functional annotations or gene ontology (GO) terms that are enriched within a directed network (such as a gene regulatory network). This works with or without edge weights and includes visualizations (both as a network where the functions are nodes and as a heatmap). PAFway is an acronym for Pairwise Associations of Functional annotations in biological networks and pathWAYs.

Package details

AuthorDaphne Ezer [aut, cre], Mahair Mahjoub [aut]
MaintainerDaphne Ezer <>
LicenseGPL (>= 2)
Package repositoryView on CRAN
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PAFway documentation built on Feb. 6, 2020, 5:13 p.m.