API for PAGI
The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways.
| Global functions | |
|---|---|
| CalGIF | Man page Source code |
| CalGIF2 | Man page Source code |
| ExampleData | Man page |
| PAGI.EnrichmentScore | Man page Source code |
| PAGI.EnrichmentScore2 | Man page Source code |
| PAGI.Main | Man page Source code |
| PAGIData | Man page |
| RandomWalk2igraph | Man page Source code |
| calTest | Man page Source code |
| class.labels | Man page |
| dataset | Man page |
| getclass.labels | Man page Source code |
| getdataset | Man page Source code |
| initializePAGI | Man page Source code |
| initializePAGIExample | Man page Source code |
| netWorkdata | Man page |
| pathway.db | Man page |
| rw | Man page Source code |
