cvCalcBulkProfile: cvCalcBulkProfile Function

In PALMO: Identify Intra and Inter-Donor Variations in Bulk or Single Cell Longitudinal Dataset

cvCalcBulkProfile Function

Description

This function allows to calculate Intra-donor variations in bulk data over longitudinal timepoints and visualize in a CV vs Mean plot. Plots stored in output directory.

Usage

cvCalcBulkProfile(data_object, cl = 2, fileName = NULL, filePATH = NULL)

Arguments

data_object	Input PALMO S4 object. It contains annotation information and expression data from Bulk or single cell data.
cl	Number of clusters. Use nCores-1 to run parallel. Default 2
fileName	User-defined filename, Default outputFile
filePATH	User-defined output directory PATH Default, current directory

Value

PALMO object with CV profile cv_all

Examples

## Not run: 
cvCalcBulkProfile(data_object=palmo_obj)

## End(Not run)

PALMO documentation built on Aug. 18, 2022, 1:06 a.m.