variancefeaturePlot: variancefeaturePlot Function

In PALMO: Identify Intra and Inter-Donor Variations in Bulk or Single Cell Longitudinal Dataset

variancefeaturePlot Function

Description

This function allows user to plot variance observed in the data by provided featureList

Usage

variancefeaturePlot(
  data_object = NULL,
  vardata = NULL,
  featureSet = "PTID",
  Residual = FALSE,
  top_n = 15,
  cols = NULL,
  ncol = NULL
)

Arguments

data_object	Input PALMO S4 object. It contains annotation information and expression data from Bulk or single cell data.
vardata	Variance result obtained from lmeVariance function
featureSet	Column of interest to focus on, Default is 'PTID'
Residual	Add residual in plot, Default FALSE
top_n	Number of top features to show. Default is 10.
cols	The colors associated with features. Default is NULL.
ncol	Plot_grid number of plot columns.

Value

variance plot list

Examples

## Not run: 
variancefeaturePlot(data_object=palmo_obj, top_n=15)

## End(Not run)

PALMO documentation built on Aug. 18, 2022, 1:06 a.m.