Sensewear_report: Generate Report for SenseWear activity data.
In PASenseWear: Summarize Daily Physical Activity from 'SenseWear' Accelerometer Data
Description
Usage
Arguments
Details
Value
Examples
View source: R/Sensewear_report.R
Description
Summarize sedentary, mild, moderate, and MVPA related activity measures.
Usage
1
Arguments
data
csv file from SenseWear
Details
MVPA long bout is defined as at least 10 consecutive minutes with METs>=3 (allowing 2 min below that threshold).
Value
Year The calendar year of recorded event
Month The calendar month of recorded event
Day The calendar day of recorded event
Dayofweek The day of that week
Time_on_body_Hrs Total time (hours) of SenseWear on body
Time_waking_wearing_Hrs Total waking time (hours) during wearing time
Time_on_body_percent Percent of wearing time of a day
Steps Total steps of the day
Time_lying_Hrs Total lying time (hours)
Time_sleeping_Hrs Total sleeping time (hours)
Time_sed_Hrs Total sedentary time (hours)
TEE_Kcal Total energy expenditure (Kcal)
Time_waking_Sedentary_Hrs When the wearer is waking, the total sedentary time (hours)
Percent_waking_sed When the wearer is waking, the percentage of sedentary time to wearing time
Time_waking_Mild_Hrs When the wearer is waking, the total mild time (hours)
Percent_waking_mild When the wearer is waking, the percentage of mild time to wearing time
Time_waking_Moderate_Hrs When the wearer is waking, the total moderate time (hours)
Percent_waking_moderate When the wearer is waking, the percentage of moderate time to wearing time
Time_waking_MVPA_Hrs When the wearer is waking, the total MVPA time (hours)
Percent_waking_MVPA When the wearer is waking, the percentage of MVPA time to wearing time
Time_waking_Vigorous_Hrs When the wearer is waking, the total vigorous time (hours)
Percent_waking_vigorous When the wearer is waking, the percentage of vigorous time to wearing time
No_sed_breaks Number of sedentary breaks (at least one minute interruption counting as a break)
Time_all_break_length_Hrs Summation of time (hours) of breaks
Average_EE_break_kcal Average energy expenditure of breaks
Time_below_1_METs_Hrs Total time (hours) of MET less than 1
Time_btw_1_2_METs_Hrs Total time (hours) of MET between 1 and 2
Time_btw_2_3_METs_Hrs Total time (hours) of MET between 2 and 3
Time_btw_3_4_METs_Hrs Total time (hours) of MET between 3 and 4
Time_btw_4_5_METs_Hrs Total time (hours) of MET between 4 and 5
Time_btw_5_6_METs_Hrs Total time (hours) of MET between 5 and 6
Time_above_6_METS_Hrs Total time (hours) of MET over 6
Steps_above_1.5_METs Summation of step count when energy expenditure is >1.5 METs with step counts not equal to 0
EE_steps_above_1.5METs_kcal Summation of energy expenditure for in Kcal when energy expenditure is >1.5 METs with step counts not equal to 0
Steps_above_3_METs Summation of step count when energy expenditure is >3 METs with step counts not equal to 0
EE_steps_above_3METs_kcal Summation of energy expenditure for in Kcal when energy expenditure is >3 METs with step counts not equal to 0
Time_100_steps_per_day_Hrs Summation of time (hours) for Steps>=100 per minute
PAEE_above_1.5METs_kcal Summation of energy expenditure in Kcal when energy expenditure is >1.5 METs
Time_PAEE_1.5METs_Hrs Summation of time (hours) when energy expenditure is >1.5 METs
PAEE_above_3METs_kcal Summation of energy expenditure in Kcal when energy expenditure is >3 METs
Time_PAEE_3METs_Hrs Summation of time (hours) energy expenditure is >3 METs
No_unBouted_10min Summation of number of MVPA bout which energy expenditure is >3 METs and length is less than 10 minutes
EE_unBouted_10min_Kcal Summation of energy expenditure of bout which energy expenditure is >3 METs and length is less than 10 minutes
Time_unBouted_10min_Hrs Summation of time (hours) of bout which length is less than 10 minutes
No_Bout_10min Summation of number of bout which length is more than 10 minutes
EE_Bouted_10min_Kcal Summation of energy expenditure of MVPA bout which length is more than 10 minutes
Time_Bouted_10min_Hrs Summation of time (hours) of MVPA bout which length is more than 10 minutes
No_Bout_20min Summation of number of MVPA bout which length is more than 20 minutes
EE_Bouted_20min_Kcal Summation of number of MVPA bout which length is more than 20 minutes
Time_Bouted_20min_Hrs Summation of time (hours) of MVPA bout which length is more than 20 minutes
No_Bout_30min Summation of number of MVPA bout which length is more than 30 minutes
EE_Bouted_30min_Kcal Summation of energy expenditure of MVPA bout which length is more than 30 minutes
Time_Bouted_30min_Hrs Summation of time (hours) of MVPA bout which length is more than 30 minutes
Mean_bout_duration Mean MVPA bout duration which bout length is more than 10 minutes: Time_Bouted_10min_Hrs/No_Bout_10min
No_Bouts_Extra_Long_steps The number of bouts of 'extra long' (>500 steps) walks in each day
No_Bouts_Long_steps The number of bouts of 'long' (100-499 steps) walks in each day
No_Bouts_Moderate_steps The number of bouts of 'moderate' (20-99 steps) walks in each day
No_Bouts_Short_steps The number of bouts of 'short' walks (<20 steps) in each day
Mean_cadence_extra_long Mean cadence (steps/min) in 'extra long' bouts of walking
Mean_cadence_long Mean cadence (steps/min) in 'long' bouts of walking
Mean_cadence_moderate Mean cadence (steps/min) in 'moderate' bouts of walking
Mean_cadence_short Mean cadence (steps/min) in 'short' bouts of walking
Mean_cadence_day Mean cadence (steps/min) in each day
Examples
1
Example output
Loading required package: ggplot2
Year Month Day Dayofweek Time_on_body_Hrs Time_on_body_percent
1 2000 1 1 6 11.98333 0.4993056
2 2000 1 2 0 24.00000 1.0000000
3 2000 1 3 1 23.20000 0.9666667
4 2000 1 4 2 23.95000 0.9979167
5 2000 1 5 3 18.51667 0.7715278
Time_waking_wearing_Hrs Steps Time_lying_Hrs Time_sleeping_Hrs Time_sed_Hrs
1 11.98333 7193 0.050000 0.000000 5.85000
2 16.91667 9757 7.600000 7.083333 17.45000
3 17.71667 7595 6.633333 5.483333 19.26667
4 15.86667 7424 8.750000 8.083333 18.06667
5 11.21667 6820 8.216667 7.300000 14.36667
TEE_Kcal Time_waking_Sedentary_Hrs Percent_waking_sed Time_waking_Mild_Hrs
1 1385.832 5.850000 0.4881780 5.750000
2 2314.333 10.366667 0.6128079 5.883333
3 2042.798 13.783333 0.7779868 3.583333
4 2149.429 9.983333 0.6292017 5.533333
5 1674.273 7.066667 0.6300149 3.350000
Percent_waking_mild Time_waking_Moderate_Hrs Percent_waking_moderate
1 0.4798331 0.3500000 0.02920723
2 0.3477833 0.6500000 0.03842365
3 0.2022578 0.3500000 0.01975541
4 0.3487395 0.3500000 0.02205882
5 0.2986627 0.7333333 0.06537890
Time_waking_MVPA_Hrs Percent_waking_MVPA Time_waking_Vigorous_Hrs
1 0.3833333 0.03198887 0.03333333
2 0.6666667 0.03940887 0.01666667
3 0.3500000 0.01975541 0.00000000
4 0.3500000 0.02205882 0.00000000
5 0.8000000 0.07132244 0.06666667
Percent_waking_vigorous No_sed_breaks Time_all_break_length_Hrs
1 0.0027816412 38 5.85000
2 0.0009852217 66 17.45000
3 0.0000000000 35 19.26667
4 0.0000000000 62 18.06667
5 0.0059435364 29 14.36667
Average_EE_break_kcal Time_below_1_METs_Hrs Time_btw_1_2_METs_Hrs
1 13.34081 1.166667 9.416667
2 19.89575 8.500000 12.966667
3 41.00424 9.983333 11.600000
4 21.15007 11.100000 11.483333
5 33.78790 10.016667 6.716667
Time_btw_2_3_METs_Hrs Time_btw_3_4_METs_Hrs Time_btw_4_5_METs_Hrs
1 1.0166667 0.2833333 0.06666667
2 1.8666667 0.6000000 0.05000000
3 1.2666667 0.2833333 0.06666667
4 1.0166667 0.2666667 0.08333333
5 0.9833333 0.6333333 0.10000000
Time_btw_5_6_METs_Hrs Time_above_6_METS_Hrs Steps_above_1.5_METs
1 0.03333333 0.00 7010
2 0.01666667 0.00 8784
3 0.00000000 0.00 5977
4 0.00000000 0.00 6142
5 0.01666667 0.05 5695
EE_steps_above_1.5METs_kcal Steps_above_3_METs EE_steps_above_3METs_kcal
1 624.4122 2343 109.6458
2 797.5503 1920 167.3069
3 491.6944 1651 96.2739
4 652.2642 1121 82.7970
5 578.1169 1729 200.3863
Time_100_steps_per day_Hrs PAEE_above_1.5METs_kcal Time_PAEE_1.5METs_Hrs
1 0.3166667 878.8819 6.133333
2 0.1333333 1001.2135 6.550000
3 0.1833333 607.6497 3.933333
4 0.1166667 838.1244 5.883333
5 0.0500000 694.4240 4.150000
PAEE_above_3METs_kcal Time_PAEE_3METs_Hrs No_unBouted_10min
1 109.6458 0.3833333 7
2 171.1336 0.6666667 17
3 96.2739 0.3500000 6
4 95.2690 0.3500000 4
5 220.7605 0.8000000 9
EE_unBouted_10min_Kcal Time_unBouted_10min_Hrs No_Bout_10min
1 65.0508 0.2500000 1
2 187.3204 0.7500000 0
3 103.2791 0.3833333 0
4 95.2690 0.3500000 0
5 174.6374 0.6333333 1
EE_Bouted_10min_Kcal Time_Bouted_10min_Hrs Mean_10min_bout_duration
1 51.4542 0.1666667 0
2 0.0000 0.0000000 0
3 0.0000 0.0000000 0
4 0.0000 0.0000000 0
5 52.4518 0.2000000 0
No_Bout_20min EE_Bouted_20min_Kcal Time_Bouted_20min_Hrs No_Bout_30min
1 0 0 0 0
2 0 0 0 0
3 0 0 0 0
4 0 0 0 0
5 0 0 0 0
EE_Bouted_30min_Kcal Time_Bouted_30min_Hrs No_Bouts_Extra_Long_steps
1 0 0 2
2 0 0 0
3 0 0 1
4 0 0 1
5 0 0 1
No_Bouts_Long_steps No_Bouts_Moderate_steps No_Bouts_Short_steps
1 5 1 0
2 8 7 2
3 3 1 1
4 2 1 0
5 4 5 0
Mean_cadence_extra_long Mean_cadence_long Mean_cadence_moderate
1 106.53333 97.10000 78.00000
2 0.00000 60.57292 38.57143
3 76.44444 80.26667 48.00000
4 63.62500 62.33333 15.00000
5 53.33333 50.74375 22.70000
Mean_cadence_short Mean_cadence_day
1 0 26.06159
2 7 24.21092
3 4 24.42122
4 0 18.60652
5 0 23.27645
PASenseWear documentation built on May 2, 2019, 2:22 p.m.
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Description Usage Arguments Details Value Examples
View source: R/Sensewear_report.R
Description
Summarize sedentary, mild, moderate, and MVPA related activity measures.
Usage
1 |
Arguments
data |
csv file from SenseWear |
Details
MVPA long bout is defined as at least 10 consecutive minutes with METs>=3 (allowing 2 min below that threshold).
Value
Year The calendar year of recorded event
Month The calendar month of recorded event
Day The calendar day of recorded event
Dayofweek The day of that week
Time_on_body_Hrs Total time (hours) of SenseWear on body
Time_waking_wearing_Hrs Total waking time (hours) during wearing time
Time_on_body_percent Percent of wearing time of a day
Steps Total steps of the day
Time_lying_Hrs Total lying time (hours)
Time_sleeping_Hrs Total sleeping time (hours)
Time_sed_Hrs Total sedentary time (hours)
TEE_Kcal Total energy expenditure (Kcal)
Time_waking_Sedentary_Hrs When the wearer is waking, the total sedentary time (hours)
Percent_waking_sed When the wearer is waking, the percentage of sedentary time to wearing time
Time_waking_Mild_Hrs When the wearer is waking, the total mild time (hours)
Percent_waking_mild When the wearer is waking, the percentage of mild time to wearing time
Time_waking_Moderate_Hrs When the wearer is waking, the total moderate time (hours)
Percent_waking_moderate When the wearer is waking, the percentage of moderate time to wearing time
Time_waking_MVPA_Hrs When the wearer is waking, the total MVPA time (hours)
Percent_waking_MVPA When the wearer is waking, the percentage of MVPA time to wearing time
Time_waking_Vigorous_Hrs When the wearer is waking, the total vigorous time (hours)
Percent_waking_vigorous When the wearer is waking, the percentage of vigorous time to wearing time
No_sed_breaks Number of sedentary breaks (at least one minute interruption counting as a break)
Time_all_break_length_Hrs Summation of time (hours) of breaks
Average_EE_break_kcal Average energy expenditure of breaks
Time_below_1_METs_Hrs Total time (hours) of MET less than 1
Time_btw_1_2_METs_Hrs Total time (hours) of MET between 1 and 2
Time_btw_2_3_METs_Hrs Total time (hours) of MET between 2 and 3
Time_btw_3_4_METs_Hrs Total time (hours) of MET between 3 and 4
Time_btw_4_5_METs_Hrs Total time (hours) of MET between 4 and 5
Time_btw_5_6_METs_Hrs Total time (hours) of MET between 5 and 6
Time_above_6_METS_Hrs Total time (hours) of MET over 6
Steps_above_1.5_METs Summation of step count when energy expenditure is >1.5 METs with step counts not equal to 0
EE_steps_above_1.5METs_kcal Summation of energy expenditure for in Kcal when energy expenditure is >1.5 METs with step counts not equal to 0
Steps_above_3_METs Summation of step count when energy expenditure is >3 METs with step counts not equal to 0
EE_steps_above_3METs_kcal Summation of energy expenditure for in Kcal when energy expenditure is >3 METs with step counts not equal to 0
Time_100_steps_per_day_Hrs Summation of time (hours) for Steps>=100 per minute
PAEE_above_1.5METs_kcal Summation of energy expenditure in Kcal when energy expenditure is >1.5 METs
Time_PAEE_1.5METs_Hrs Summation of time (hours) when energy expenditure is >1.5 METs
PAEE_above_3METs_kcal Summation of energy expenditure in Kcal when energy expenditure is >3 METs
Time_PAEE_3METs_Hrs Summation of time (hours) energy expenditure is >3 METs
No_unBouted_10min Summation of number of MVPA bout which energy expenditure is >3 METs and length is less than 10 minutes
EE_unBouted_10min_Kcal Summation of energy expenditure of bout which energy expenditure is >3 METs and length is less than 10 minutes
Time_unBouted_10min_Hrs Summation of time (hours) of bout which length is less than 10 minutes
No_Bout_10min Summation of number of bout which length is more than 10 minutes
EE_Bouted_10min_Kcal Summation of energy expenditure of MVPA bout which length is more than 10 minutes
Time_Bouted_10min_Hrs Summation of time (hours) of MVPA bout which length is more than 10 minutes
No_Bout_20min Summation of number of MVPA bout which length is more than 20 minutes
EE_Bouted_20min_Kcal Summation of number of MVPA bout which length is more than 20 minutes
Time_Bouted_20min_Hrs Summation of time (hours) of MVPA bout which length is more than 20 minutes
No_Bout_30min Summation of number of MVPA bout which length is more than 30 minutes
EE_Bouted_30min_Kcal Summation of energy expenditure of MVPA bout which length is more than 30 minutes
Time_Bouted_30min_Hrs Summation of time (hours) of MVPA bout which length is more than 30 minutes
Mean_bout_duration Mean MVPA bout duration which bout length is more than 10 minutes: Time_Bouted_10min_Hrs/No_Bout_10min
No_Bouts_Extra_Long_steps The number of bouts of 'extra long' (>500 steps) walks in each day
No_Bouts_Long_steps The number of bouts of 'long' (100-499 steps) walks in each day
No_Bouts_Moderate_steps The number of bouts of 'moderate' (20-99 steps) walks in each day
No_Bouts_Short_steps The number of bouts of 'short' walks (<20 steps) in each day
Mean_cadence_extra_long Mean cadence (steps/min) in 'extra long' bouts of walking
Mean_cadence_long Mean cadence (steps/min) in 'long' bouts of walking
Mean_cadence_moderate Mean cadence (steps/min) in 'moderate' bouts of walking
Mean_cadence_short Mean cadence (steps/min) in 'short' bouts of walking
Mean_cadence_day Mean cadence (steps/min) in each day
Examples
1 |
Example output
Loading required package: ggplot2
Year Month Day Dayofweek Time_on_body_Hrs Time_on_body_percent
1 2000 1 1 6 11.98333 0.4993056
2 2000 1 2 0 24.00000 1.0000000
3 2000 1 3 1 23.20000 0.9666667
4 2000 1 4 2 23.95000 0.9979167
5 2000 1 5 3 18.51667 0.7715278
Time_waking_wearing_Hrs Steps Time_lying_Hrs Time_sleeping_Hrs Time_sed_Hrs
1 11.98333 7193 0.050000 0.000000 5.85000
2 16.91667 9757 7.600000 7.083333 17.45000
3 17.71667 7595 6.633333 5.483333 19.26667
4 15.86667 7424 8.750000 8.083333 18.06667
5 11.21667 6820 8.216667 7.300000 14.36667
TEE_Kcal Time_waking_Sedentary_Hrs Percent_waking_sed Time_waking_Mild_Hrs
1 1385.832 5.850000 0.4881780 5.750000
2 2314.333 10.366667 0.6128079 5.883333
3 2042.798 13.783333 0.7779868 3.583333
4 2149.429 9.983333 0.6292017 5.533333
5 1674.273 7.066667 0.6300149 3.350000
Percent_waking_mild Time_waking_Moderate_Hrs Percent_waking_moderate
1 0.4798331 0.3500000 0.02920723
2 0.3477833 0.6500000 0.03842365
3 0.2022578 0.3500000 0.01975541
4 0.3487395 0.3500000 0.02205882
5 0.2986627 0.7333333 0.06537890
Time_waking_MVPA_Hrs Percent_waking_MVPA Time_waking_Vigorous_Hrs
1 0.3833333 0.03198887 0.03333333
2 0.6666667 0.03940887 0.01666667
3 0.3500000 0.01975541 0.00000000
4 0.3500000 0.02205882 0.00000000
5 0.8000000 0.07132244 0.06666667
Percent_waking_vigorous No_sed_breaks Time_all_break_length_Hrs
1 0.0027816412 38 5.85000
2 0.0009852217 66 17.45000
3 0.0000000000 35 19.26667
4 0.0000000000 62 18.06667
5 0.0059435364 29 14.36667
Average_EE_break_kcal Time_below_1_METs_Hrs Time_btw_1_2_METs_Hrs
1 13.34081 1.166667 9.416667
2 19.89575 8.500000 12.966667
3 41.00424 9.983333 11.600000
4 21.15007 11.100000 11.483333
5 33.78790 10.016667 6.716667
Time_btw_2_3_METs_Hrs Time_btw_3_4_METs_Hrs Time_btw_4_5_METs_Hrs
1 1.0166667 0.2833333 0.06666667
2 1.8666667 0.6000000 0.05000000
3 1.2666667 0.2833333 0.06666667
4 1.0166667 0.2666667 0.08333333
5 0.9833333 0.6333333 0.10000000
Time_btw_5_6_METs_Hrs Time_above_6_METS_Hrs Steps_above_1.5_METs
1 0.03333333 0.00 7010
2 0.01666667 0.00 8784
3 0.00000000 0.00 5977
4 0.00000000 0.00 6142
5 0.01666667 0.05 5695
EE_steps_above_1.5METs_kcal Steps_above_3_METs EE_steps_above_3METs_kcal
1 624.4122 2343 109.6458
2 797.5503 1920 167.3069
3 491.6944 1651 96.2739
4 652.2642 1121 82.7970
5 578.1169 1729 200.3863
Time_100_steps_per day_Hrs PAEE_above_1.5METs_kcal Time_PAEE_1.5METs_Hrs
1 0.3166667 878.8819 6.133333
2 0.1333333 1001.2135 6.550000
3 0.1833333 607.6497 3.933333
4 0.1166667 838.1244 5.883333
5 0.0500000 694.4240 4.150000
PAEE_above_3METs_kcal Time_PAEE_3METs_Hrs No_unBouted_10min
1 109.6458 0.3833333 7
2 171.1336 0.6666667 17
3 96.2739 0.3500000 6
4 95.2690 0.3500000 4
5 220.7605 0.8000000 9
EE_unBouted_10min_Kcal Time_unBouted_10min_Hrs No_Bout_10min
1 65.0508 0.2500000 1
2 187.3204 0.7500000 0
3 103.2791 0.3833333 0
4 95.2690 0.3500000 0
5 174.6374 0.6333333 1
EE_Bouted_10min_Kcal Time_Bouted_10min_Hrs Mean_10min_bout_duration
1 51.4542 0.1666667 0
2 0.0000 0.0000000 0
3 0.0000 0.0000000 0
4 0.0000 0.0000000 0
5 52.4518 0.2000000 0
No_Bout_20min EE_Bouted_20min_Kcal Time_Bouted_20min_Hrs No_Bout_30min
1 0 0 0 0
2 0 0 0 0
3 0 0 0 0
4 0 0 0 0
5 0 0 0 0
EE_Bouted_30min_Kcal Time_Bouted_30min_Hrs No_Bouts_Extra_Long_steps
1 0 0 2
2 0 0 0
3 0 0 1
4 0 0 1
5 0 0 1
No_Bouts_Long_steps No_Bouts_Moderate_steps No_Bouts_Short_steps
1 5 1 0
2 8 7 2
3 3 1 1
4 2 1 0
5 4 5 0
Mean_cadence_extra_long Mean_cadence_long Mean_cadence_moderate
1 106.53333 97.10000 78.00000
2 0.00000 60.57292 38.57143
3 76.44444 80.26667 48.00000
4 63.62500 62.33333 15.00000
5 53.33333 50.74375 22.70000
Mean_cadence_short Mean_cadence_day
1 0 26.06159
2 7 24.21092
3 4 24.42122
4 0 18.60652
5 0 23.27645
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