PBSadmb: ADMB for R Using Scripts or GUI

R Support for ADMB (Automatic Differentiation Model Builder)

Author
Jon T. Schnute <schnutej-dfo@shaw.ca>, Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>, Alex Couture-Beil <alex@mofo.ca>
Date of publication
2014-04-09 17:35:30
Maintainer
Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>
License
GPL (>= 2)
Version
0.68.104
URLs

View on CRAN

Man pages

admb
Start the PBSadmb GUI for ADMB
appendLog
Append Data to Log File
atget
Get/Print Objects From or Put Objects Into Temporary Work...
checkADopts
Check ADMB Options for Link Integrity
cleanAD
Clean ADMB-Generated Files from the Working Directory
compAD
Compile C Code
convAD
Convert TPL Code to CPP Code
convOS
Convert Text Files to Default OS Format
copyFiles
Copy System Files
editAD
Edit ADMB Files
editADfile
Edit a File
linkAD
Link Object Files to Make an Executable
makeAD
Make an Executable Binary File from a C File
makeADopts
Creates the ADMB Options List
plotMC
Plot Results of MCMC Simulation
readADopts
Reads an ADMB Options List into Memory From a File
readADpaths
Read ADMB Paths From a Text File
readRep
Read an ADMB Report into R Memory
runAD
Run an Executable Binary File
runMC
Run an Executable Binary File in MCMC Mode
setADMBPath
Creates the ADMB Options List
setupAD
Set Up Paths for PBSadmb
showADargs
Show All Arguments for an ADMB Executable
startLog
Start a Log File
suggestPath
Suggest a Path to a Specified Program
writeADopts
Writes the ADMB Options List from Memory to a File

Files in this package

PBSadmb
PBSadmb/inst
PBSadmb/inst/examples
PBSadmb/inst/examples/simple_pbs.r
PBSadmb/inst/examples/simple_pbs.tpl
PBSadmb/inst/examples/ADpaths
PBSadmb/inst/examples/pheno.tpl
PBSadmb/inst/examples/catage.pdf
PBSadmb/inst/examples/simple_mc.tpl
PBSadmb/inst/examples/simple_mc.dat
PBSadmb/inst/examples/simple_mc.pin
PBSadmb/inst/examples/pheno.dat
PBSadmb/inst/examples/vonb.dat
PBSadmb/inst/examples/pheno.pdf
PBSadmb/inst/examples/pheno.pin
PBSadmb/inst/examples/simple.pin
PBSadmb/inst/examples/simple.dat
PBSadmb/inst/examples/simple_pbs.pin
PBSadmb/inst/examples/vonb.tpl
PBSadmb/inst/examples/vonb.pin
PBSadmb/inst/examples/simple_pbs.dat
PBSadmb/inst/examples/catage.tpl
PBSadmb/inst/examples/simple.tpl
PBSadmb/inst/examples/ADpaths.txt
PBSadmb/inst/examples/vonb.r
PBSadmb/inst/examples/catage.dat
PBSadmb/inst/win
PBSadmb/inst/win/admbWin.txt
PBSadmb/inst/win/admbLog.txt
PBSadmb/inst/doc
PBSadmb/inst/doc/00ReadMe.txt
PBSadmb/inst/doc/index.html
PBSadmb/inst/doc/PBSadmbIntro.pdf
PBSadmb/inst/doc/admb.pdf
PBSadmb/inst/doc/admb-re.pdf
PBSadmb/inst/doc/autodif.pdf
PBSadmb/inst/doc/ChangeLog.txt
PBSadmb/inst/doc/PBSadmb-UG.pdf
PBSadmb/inst/ADMtools
PBSadmb/inst/ADMtools/ADMlink.bat
PBSadmb/inst/ADMtools/ADMmcmc.bat
PBSadmb/inst/ADMtools/ADMcheck.bat
PBSadmb/inst/ADMtools/ADMcomp.bat
PBSadmb/inst/ADMtools/ADMclean.bat
PBSadmb/inst/ADMtools/ADMconv.bat
PBSadmb/inst/ADMtools/ADMmake.bat
PBSadmb/inst/ADMtools/ADMpaths.bat
PBSadmb/NAMESPACE
PBSadmb/R
PBSadmb/R/PBSadmb.r
PBSadmb/R/zzz.r
PBSadmb/vignettes
PBSadmb/vignettes/PBSadmbIntro.Rnw
PBSadmb/MD5
PBSadmb/DESCRIPTION
PBSadmb/man
PBSadmb/man/runMC.Rd
PBSadmb/man/makeADopts.Rd
PBSadmb/man/convAD.Rd
PBSadmb/man/cleanAD.Rd
PBSadmb/man/startLog.Rd
PBSadmb/man/checkADopts.Rd
PBSadmb/man/plotMC.Rd
PBSadmb/man/suggestPath.Rd
PBSadmb/man/runAD.Rd
PBSadmb/man/copyFiles.Rd
PBSadmb/man/linkAD.Rd
PBSadmb/man/admb.Rd
PBSadmb/man/editADfile.Rd
PBSadmb/man/readADpaths.Rd
PBSadmb/man/editAD.Rd
PBSadmb/man/setupAD.Rd
PBSadmb/man/writeADopts.Rd
PBSadmb/man/convOS.Rd
PBSadmb/man/readRep.Rd
PBSadmb/man/readADopts.Rd
PBSadmb/man/showADargs.Rd
PBSadmb/man/makeAD.Rd
PBSadmb/man/setADMBPath.Rd
PBSadmb/man/appendLog.Rd
PBSadmb/man/atget.Rd
PBSadmb/man/compAD.Rd