PBSadmb: ADMB for R Using Scripts or GUI
Version 0.68.104

R Support for ADMB (Automatic Differentiation Model Builder)

Browse man pages Browse package API and functions Browse package files

AuthorJon T. Schnute <schnutej-dfo@shaw.ca>, Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>, Alex Couture-Beil <alex@mofo.ca>
Date of publication2014-04-09 17:35:30
MaintainerRowan Haigh <rowan.haigh@dfo-mpo.gc.ca>
LicenseGPL (>= 2)
Version0.68.104
URL http://code.google.com/p/pbs-admb/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("PBSadmb")

Man pages

admb: Start the PBSadmb GUI for ADMB
appendLog: Append Data to Log File
atget: Get/Print Objects From or Put Objects Into Temporary Work...
checkADopts: Check ADMB Options for Link Integrity
cleanAD: Clean ADMB-Generated Files from the Working Directory
compAD: Compile C Code
convAD: Convert TPL Code to CPP Code
convOS: Convert Text Files to Default OS Format
copyFiles: Copy System Files
editAD: Edit ADMB Files
editADfile: Edit a File
linkAD: Link Object Files to Make an Executable
makeAD: Make an Executable Binary File from a C File
makeADopts: Creates the ADMB Options List
plotMC: Plot Results of MCMC Simulation
readADopts: Reads an ADMB Options List into Memory From a File
readADpaths: Read ADMB Paths From a Text File
readRep: Read an ADMB Report into R Memory
runAD: Run an Executable Binary File
runMC: Run an Executable Binary File in MCMC Mode
setADMBPath: Creates the ADMB Options List
setupAD: Set Up Paths for PBSadmb
showADargs: Show All Arguments for an ADMB Executable
startLog: Start a Log File
suggestPath: Suggest a Path to a Specified Program
writeADopts: Writes the ADMB Options List from Memory to a File

Functions

addQuotes Source code
admb Man page Source code
alisp Man page Source code
appendLog Man page Source code
appendToPath Source code
asIs Source code
atcall Man page Source code
atget Man page Source code
atprint Man page Source code
atput Man page Source code
callSys Source code
changeWD Source code
changeWDEnter Source code
checkADopts Man page Source code
chooseCols Source code
cleanAD Man page Source code
cleanUp Source code
cleanUpAgain Source code
cleanWD Source code
compAD Man page Source code
convAD Man page Source code
convOS Man page Source code
copyFiles Man page Source code
doCleanADMB Source code
editAD Man page Source code
editADfile Man page Source code
getDirName Source code
linkAD Man page Source code
load.prefix.droplist Source code
makeAD Man page Source code
makeADopts Man page Source code
nitOptions Source code
normPath Source code
onAttach Source code
onUnload Source code
plotMC Man page Source code
readADopts Man page Source code
readADpaths Man page Source code
readRep Man page Source code
runAD Man page Source code
runMC Man page Source code
saveADpaths Man page Source code
setADMBPath Man page Source code
setADMBVer Man page Source code
setPath Source code
setupAD Man page Source code
showADargs Man page Source code
startLog Man page Source code
suggestPath Man page Source code
version Source code
win.appendLog Source code
win.checkADopts Source code
win.cleanAD Source code
win.compAD Source code
win.convAD Source code
win.editAD Source code
win.editPLT Source code
win.findClean Source code
win.findTPL Source code
win.linkAD Source code
win.makeAD Source code
win.makeADopts Source code
win.plotMC Source code
win.readADopts Source code
win.readADpaths Source code
win.readRep Source code
win.run Source code
win.runAD Source code
win.runMC Source code
win.saveADpaths Source code
win.setADMBPath Source code
win.setADMBVer Source code
win.showADargs Source code
win.showGUIargs Source code
win.startLog Source code
win.suggestPath Source code
win.viewCode Source code Source code
win.viewRep Source code
win.writeADopts Source code
writeADopts Man page Source code

Files

inst
inst/examples
inst/examples/simple_pbs.r
inst/examples/simple_pbs.tpl
inst/examples/ADpaths
inst/examples/pheno.tpl
inst/examples/catage.pdf
inst/examples/simple_mc.tpl
inst/examples/simple_mc.dat
inst/examples/simple_mc.pin
inst/examples/pheno.dat
inst/examples/vonb.dat
inst/examples/pheno.pdf
inst/examples/pheno.pin
inst/examples/simple.pin
inst/examples/simple.dat
inst/examples/simple_pbs.pin
inst/examples/vonb.tpl
inst/examples/vonb.pin
inst/examples/simple_pbs.dat
inst/examples/catage.tpl
inst/examples/simple.tpl
inst/examples/ADpaths.txt
inst/examples/vonb.r
inst/examples/catage.dat
inst/win
inst/win/admbWin.txt
inst/win/admbLog.txt
inst/doc
inst/doc/00ReadMe.txt
inst/doc/index.html
inst/doc/PBSadmbIntro.pdf
inst/doc/admb.pdf
inst/doc/admb-re.pdf
inst/doc/autodif.pdf
inst/doc/ChangeLog.txt
inst/doc/PBSadmb-UG.pdf
inst/ADMtools
inst/ADMtools/ADMlink.bat
inst/ADMtools/ADMmcmc.bat
inst/ADMtools/ADMcheck.bat
inst/ADMtools/ADMcomp.bat
inst/ADMtools/ADMclean.bat
inst/ADMtools/ADMconv.bat
inst/ADMtools/ADMmake.bat
inst/ADMtools/ADMpaths.bat
NAMESPACE
R
R/PBSadmb.r
R/zzz.r
vignettes
vignettes/PBSadmbIntro.Rnw
MD5
DESCRIPTION
man
man/runMC.Rd
man/makeADopts.Rd
man/convAD.Rd
man/cleanAD.Rd
man/startLog.Rd
man/checkADopts.Rd
man/plotMC.Rd
man/suggestPath.Rd
man/runAD.Rd
man/copyFiles.Rd
man/linkAD.Rd
man/admb.Rd
man/editADfile.Rd
man/readADpaths.Rd
man/editAD.Rd
man/setupAD.Rd
man/writeADopts.Rd
man/convOS.Rd
man/readRep.Rd
man/readADopts.Rd
man/showADargs.Rd
man/makeAD.Rd
man/setADMBPath.Rd
man/appendLog.Rd
man/atget.Rd
man/compAD.Rd
PBSadmb documentation built on May 19, 2017, 7:07 a.m.