PCGSE: Principal Component Gene Set Enrichment
Version 0.4

Contains logic for computing the statistical association of variable groups, i.e., gene sets, with respect to the principal components of genomic data.

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AuthorH. Robert Frost
Date of publication2017-03-31 16:43:20 UTC
MaintainerH. Robert Frost <rob.frost@dartmouth.edu>
LicenseGPL (>= 2)
Version0.4
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("PCGSE")

Man pages

pcgse: Principal component gene set enrichment (PCGSE) algorithm
PCGSE-package: Implementation of the Principal Component Gene Set Enrichment...
sgse: Spectral gene set enrichment (SGSE) algorithm

Functions

PCGSE-package Man page
combinePValues Source code
computeGeneStatistics Source code
createVarGroupList Source code
global.StandAveDiff Source code
local.GeneStatistics Source code
pcRMT Source code
pcgse Man page Source code
pcgseViaSAFE Source code
pcgseViaTTest Source code
pcgseViaWMW Source code
sgse Man page Source code

Files

NAMESPACE
R
R/PCGSE.R
R/SGSE.R
MD5
DESCRIPTION
man
man/pcgse.Rd
man/sgse.Rd
man/PCGSE-package.Rd
PCGSE documentation built on May 19, 2017, 3:49 p.m.