Implementation of the Principal Component Gene Set Enrichment (PCGSE) and Spectral Gene Set Enrichment (SGSE) algorithms
Contains logic to compute the statistical association between gene sets and the principal components of experimental data.
Principal component gene set enrichment is performed using the function
Spectral gene set enrichment is performed using the function
This work was supported by the National Institutes of Health R01 grants LM010098, LM011360, EY022300, GM103506 and GM103534.
H. Robert Frost
Frost, H. R., Li, Z., and Moore, J. H. (2014). Principal component gene set enrichment (PCGSE). ArXiv e-prints. arXiv:1403.5148.
Frost, H. R., Li, Z., and Moore, J. H. (2014). Spectral gene set enrichment (SGSE). ArXiv e-prints.
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