PHENIX: Phenotypic Integration Index

Provides functions to estimate the size-controlled phenotypic integration index, a novel method by Torices & Méndez (2014) to solve problems due to individual size when estimating integration (namely, larger individuals have larger components, which will drive a correlation between components only due to resource availability that might obscure the observed measures of integration). In addition, the package also provides the classical estimation by Wagner (1984), bootstrapping and jackknife methods to calculate confidence intervals and a significance test for both integration indices.

Author
R. Torices, A. J. Muñoz-Pajares
Date of publication
2016-04-27 18:28:31
Maintainer
A. J. Muñoz-Pajares <ajesusmp@cibio.up.pt>
License
GPL (>= 2)
Version
1.3

View on CRAN

Man pages

cor.par
Partial correlation
paeonia
phenotypic integration example dataset #1
PHENIX-package
size-controlled phenotypic integration index
pint
Phenotypic integration index by Wagner
pint.boot
Phenotypic integration (by Wagner) bootstrap intervals
pint.jack
Phenotypic integration (by Wagner) jackknife resampling
pint.p
Phenotypic integration index (by Wagner) significance test
pintsc
size-controlled phenotypic integration
pintsc.boot
size-controlled phenotypic integration bootstrap intervals
pintsc.jack
size-controlled phenotypic integration jackknife resampling
pintsc.p
size-controlled phenotypic integration index significance...
tussilago
phenotypic integration example dataset #2

Files in this package

PHENIX
PHENIX/inst
PHENIX/inst/CITATION
PHENIX/NAMESPACE
PHENIX/NEWS
PHENIX/data
PHENIX/data/tussilago.txt.gz
PHENIX/data/paeonia.txt.gz
PHENIX/R
PHENIX/R/cor.par.R
PHENIX/R/pint.jack.R
PHENIX/R/pintsc.jack.R
PHENIX/R/pintsc.p.R
PHENIX/R/pint.p.R
PHENIX/R/pintsc.boot.R
PHENIX/R/pint.boot.R
PHENIX/R/pintsc.R
PHENIX/R/pint.R
PHENIX/MD5
PHENIX/DESCRIPTION
PHENIX/man
PHENIX/man/pintsc.boot.Rd
PHENIX/man/PHENIX-package.Rd
PHENIX/man/pintsc.jack.Rd
PHENIX/man/pintsc.Rd
PHENIX/man/pint.boot.Rd
PHENIX/man/pint.jack.Rd
PHENIX/man/cor.par.Rd
PHENIX/man/pintsc.p.Rd
PHENIX/man/pint.p.Rd
PHENIX/man/paeonia.Rd
PHENIX/man/pint.Rd
PHENIX/man/tussilago.Rd