Helper.functions: Helper functions

Description Value Author(s) References

Description

Several helper functions used by the PHYLOGR main functions (i.e., these functions are called from other functions). These are all one to three lines functions, which are used in lieu of calls to read.table, scan, etc. They are of no immediate use for the end user, but might be helpful for further programming.

Value

Depends on the helper function; here is a summary:

num.sim.tips

number of tips and number of simulations of a simulated data set

number.of.simulations

the number of simulations of a simulated data set

number.of.tips.inp

number of tips in inp data file

number.of.tips.pdi

ditto for pdi

number.of.tips.sim

ditto for sim

scan.inp.file

the two columns with data from inp file

scan.pdi.file

ditto for pdi

scan.simulation.file

ditto for sim file

tips.names.inp

the names of tips from an inp file

tips.names.pdi

ditto for pdi

Author(s)

Ramon Diaz-Uriarte and Theodore Garland, Jr.

References

Diaz-Uriarte, R., and Garland, T., Jr., in prep. PHYLOGR: an R package for the analysis of comparative data via Monte Carlo simulations and generalized least squares approaches.


PHYLOGR documentation built on April 14, 2020, 7 p.m.