KIRC: Kidney renal clear cell carcinoma dataset

Description Format Source References

Description

The Cancer Genome Atlas Kidney Renal Clear Cell Carcinoma (TCGA-KIRC) data collection is part of a larger effort to build a research community focused on connecting cancer phenotypes to genotypes by providing clinical images matched to subjects from The Cancer Genome Atlas (TCGA). Clinical, genetic, and pathological data resides in the Genomic Data Commons (GDC) Data Portal while the radiological data is stored on The Cancer Imaging Archive (TCIA).

This embed version of KIRC in PINPlus package is the reduced version of KIRC using Principle Component Analysis.

Format

A list containing properties:

Name Type Description
GE data.frame mRNA expression data
ME data.frame DNA Methylation data
MI data.frame miRNA expression data
survival data.frame Clinical survival data

Source

https://wiki.cancerimagingarchive.net/display/Public/TCGA-KIRC

References

Akin, O., Elnajjar, P., Heller, M., Jarosz, R., Erickson, B. J., Kirk, S., ... Filippini, J. (2016). Radiology Data from The Cancer Genome Atlas Kidney Renal Clear Cell Carcinoma [TCGA-KIRC] collection. The Cancer Imaging Archive.


PINSPlus documentation built on Aug. 7, 2020, 1:06 a.m.