KIRC: Kidney renal clear cell carcinoma dataset

In PINSPlus: Clustering Algorithm for Data Integration and Disease Subtyping

Description

The Cancer Genome Atlas Kidney Renal Clear Cell Carcinoma (TCGA-KIRC) data collection is part of a larger effort to build a research community focused on connecting cancer phenotypes to genotypes by providing clinical images matched to subjects from The Cancer Genome Atlas (TCGA). Clinical, genetic, and pathological data resides in the Genomic Data Commons (GDC) Data Portal while the radiological data is stored on The Cancer Imaging Archive (TCIA).

This embed version of KIRC in PINPlus package is the reduced version of KIRC using Principle Component Analysis.

Format

A list containing properties:

Name	Type	Description
GE	data.frame	mRNA expression data
ME	data.frame	DNA Methylation data
MI	data.frame	miRNA expression data
survival	data.frame	Clinical survival data

Source

https://wiki.cancerimagingarchive.net/display/Public/TCGA-KIRC

References

Akin, O., Elnajjar, P., Heller, M., Jarosz, R., Erickson, B. J., Kirk, S., ... Filippini, J. (2016). Radiology Data from The Cancer Genome Atlas Kidney Renal Clear Cell Carcinoma [TCGA-KIRC] collection. The Cancer Imaging Archive.

PINSPlus documentation built on Dec. 15, 2021, 1:10 a.m.