API for PKbioanalysis
Pharmacokinetic Bioanalysis Experiments Design and Exploration
| Global functions | |
|---|---|
| .add_blank_after_high_conc | Source code |
| .add_blank_at_end | Source code |
| .add_every_n | Source code |
| .add_samples_dispatch | Source code |
| .bind_new_samples | Source code |
| .check_cmpd_list | Source code |
| .check_feasible_adding | Source code |
| .check_qcs | Source code |
| .check_sample_db | Source code |
| .check_transitions | Source code |
| .child_to_df | Man page Source code |
| .clean_list | Source code |
| .close_db | Source code |
| .cmpds_string_handler | Source code |
| .compile_cached_plates | Source code |
| .compound_trans_df | Source code |
| .conc_ratio | Source code |
| .connect_to_db | Source code |
| .construct_experiment_compounds | Source code |
| .construct_experiment_peaktab | Source code |
| .construct_experiment_peaktab.deprecated | Source code |
| .construct_experiment_transitions | Source code |
| .construct_file_meta | Source code |
| .construct_linearity | Source code |
| .construct_pk_metadata | Source code |
| .construct_resEstim | Source code |
| .construct_samples_metadata | Source code |
| .construct_suitability | Source code |
| .filter_cmpd | Source code |
| .filter_peak | Man page Source code |
| .final_vol | Source code |
| .find_max_intensity | Source code |
| .find_passed | Source code |
| .find_passed_lloq | Source code |
| .find_passed_qc_level | Source code |
| .find_passed_uloq | Source code |
| .find_peak | Source code |
| .gen_edges | Source code |
| .gen_graph | Source code |
| .gen_nodes | Source code |
| .generate_testing_injeseq | Source code |
| .get_compound_id_from_compound_trans | Source code |
| .get_compound_trans_from_compound_id | Source code |
| .get_item | Source code |
| .get_method_cmpds | Source code |
| .get_method_id | Source code |
| .get_method_transitions | Source code |
| .get_methodsdb | Source code |
| .get_plates_db | Source code |
| .get_samplelist | Source code |
| .get_samplesdb_metadata | Source code |
| .get_suitability | Source code |
| .get_xplore | Source code |
| .injecList | Source code |
| .integrate_all_slack | Source code |
| .integrate_individual_slack | Source code |
| .integrate_next_slack | Source code |
| .is_registered | Source code |
| .last_entity | Source code |
| .last_list_id | Source code |
| .merge_qc_analyte | Source code |
| .multi_graph | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| .parallel_dilution | Source code |
| .parse_cmpds | Man page Source code |
| .parse_tlynx_csv | Man page Source code |
| .parse_tlynx_xml | Man page Source code |
| .parsemzml | Source code |
| .parsewatersraw | Source code |
| .peak_res | Source code |
| .peakresToDF | Source code |
| .plate_id | Source code |
| .plate_subid | Source code |
| .register_plate_logic | Source code |
| .reset_samples_db | Source code |
| .retrieve_plate | Source code |
| .save_cmpd_db | Source code |
| .sort_chromatograms | Source code |
| .spot_mask | Source code |
| .transition_string_handler | Source code |
| .trim_id | Source code |
| .vis_data | Source code |
| .which_transition | Source code |
| .write_transitions | Source code |
| PKbioanalysis | Man page |
| PKbioanalysis-package | Man page |
| PlateObj | Source code |
| RRF | Source code |
| [[,MultiPlate-method | Man page |
| accuracy | Source code |
| add_DB | Man page Source code |
| add_DQC | Man page Source code |
| add_QC | Man page Source code |
| add_blank | Man page Source code |
| add_column_if_missing | Source code |
| add_cs_curve | Man page Source code |
| add_dosing_db | Source code |
| add_sample_info | Source code |
| add_sample_log | Source code |
| add_samples | Man page Source code |
| add_samples_db | Man page Source code |
| add_samples_db2 | Man page Source code |
| add_subjects_db | Source code |
| add_suitability | Man page Source code |
| ai_chat_module_server | Source code |
| ai_chat_module_ui | Source code |
| apply_area_cutoff | Source code |
| area_report.PeakRes | Man page Source code |
| auto_add_row | Source code |
| build_injec_seq | Man page |
| build_injec_seq,MultiPlate-method | Man page |
| build_injec_seq,PlateObj-method | Man page |
| cal_var_pattern_vec | Source code |
| calc_var_summary | Man page Source code |
| chatfunc | Source code |
| check_QC_reps | Source code |
| check_all | Source code |
| check_call_plate | Source code |
| check_chrom_cmpds | Man page Source code |
| check_chromatograms_consistency | Source code |
| check_last_fill | Source code |
| check_quantRes | Source code |
| check_quant_method_quantres | Source code |
| chrom_app | Man page Source code |
| chrom_data_load_server | Source code |
| chrom_data_load_ui | Source code |
| chromapp_server | Source code |
| chromapp_ui | Source code |
| chromres_to_matrix | Source code |
| clean_rht_to_df | Source code |
| clear_python_deps | Man page Source code |
| combine_injec_lists | Man page Source code |
| combine_plates | Man page Source code |
| config_module_server | Source code |
| config_module_ui | Source code |
| config_path | Source code |
| config_suitability | Man page Source code |
| create_new_study | Man page Source code |
| create_quant_object | Source code |
| current_cmpds | Source code |
| cv | Man page Source code |
| derive_rel_response | Source code |
| dir_or_files_to_files | Source code |
| download_sample_list | Man page Source code |
| empty_string_to_na | Source code |
| estim_dil_limit | Man page Source code |
| estim_lloq | Man page Source code |
| exclude_linearity | Source code |
| export_integration | Man page Source code |
| export_pk_profiles | Source code |
| export_run | Man page Source code |
| extract_peak_bounds | Man page Source code |
| extract_pk_profiles | Source code |
| fill_scheme | Man page Source code |
| fill_uuid | Source code |
| filter_chrom | Man page Source code |
| fit_var | Man page Source code |
| formated_print | Man page Source code |
| gen_plate_positions | Source code |
| generate_96 | Man page Source code |
| get_IS | Source code |
| get_IS_name | Source code |
| get_cmpd_IS | Source code |
| get_compound_ID | Man page Source code |
| get_compound_name | Source code |
| get_injecseq_relation | Source code |
| get_n_arms | Source code |
| get_n_samples | Source code |
| get_n_subjects | Source code |
| get_pkbioanalysis_option | Source code |
| get_sample_ID | Man page Source code |
| get_sample_names | Man page Source code |
| get_study_arms | Source code |
| get_study_name | Source code |
| get_study_subject_type | Source code |
| get_study_subjects | Source code |
| get_trans_id_from_cmpd_id | Source code |
| get_trans_id_from_trans_label | Source code |
| get_trans_label_from_id | Source code |
| get_vials.ChromRes | Source code |
| get_vials.QuantRes | Source code |
| ggiraph_config1 | Source code |
| has_IS | Source code |
| has_default_RT | Man page Source code |
| has_linearity | Source code |
| has_pk_profiles | Source code |
| has_suitability_config | Source code |
| has_suitability_results | Source code |
| include_linearity | Source code |
| injec_seq_block_protocol_ui | Source code |
| injec_seq_block_server | Source code |
| injeclist_ai | Source code |
| install_py_dep | Man page Source code |
| integrate | Man page Source code |
| integrate_ai | Source code |
| is_integrated | Man page |
| is_integrated,ChromRes-method | Man page |
| is_integrated,ChromResBase-method | Man page |
| is_integrated_chrom_base | Source code |
| is_integrated_chrom_res | Source code |
| is_pk_study | Source code |
| is_smoothed | Man page Source code |
| last_row_empty | Source code |
| length,MultiPlate-method | Man page |
| length_empty_layout | Source code |
| linearity_ai | Source code |
| linearity_data_server | Source code |
| linearity_normalized | Source code |
| linearity_ui | Source code |
| list_all_studies | Source code |
| list_compound_names | Source code |
| mae | Source code |
| make_calibration_study | Man page Source code |
| make_cell_stability_study | Source code |
| make_metabolic_study | Man page Source code |
| make_sequence_names | Source code |
| mape | Source code |
| modify_method | Source code |
| mse | Source code |
| nca_table | Source code |
| normalizeIS | Source code |
| orderdf | Source code |
| paste5 | Source code |
| peakres_to_chromres | Source code |
| pk_server | Source code |
| pk_ui | Source code |
| plate_ai | Source code |
| plate_groups | Source code |
| plate_metadata | Man page Source code |
| plate_plot_module_ui | Source code |
| plate_tree | Man page Source code |
| plot.PlateObj | Man page Source code |
| plot_RT.ChromRes | Man page Source code |
| plot_RT.PeakRes | Man page Source code |
| plot_area_bar.ChromRes | Source code |
| plot_area_dot.ChromRes | Source code |
| plot_areas_heatmap | Source code |
| plot_chrom | Man page Source code |
| plot_deviations | Source code |
| plot_linearity | Source code |
| plot_peak_areas.PeakRes | Man page Source code |
| plot_pk_profiles | Source code |
| plot_residuals | Source code |
| plot_standard_deviation | Source code |
| plot_study_design | Source code |
| plot_suitability | Source code |
| plot_suitability_trend | Source code |
| plot_var_pattern | Man page Source code |
| precision_per_vial | Man page Source code |
| prefilter_precision_data | Man page |
| prefilter_precision_data,QuantRes-method | Man page |
| prefilter_precision_data,data.frame-method | Man page |
| prefilter_precision_data.QuantRes | Source code |
| prefilter_precision_data.data.frame | Source code |
| prepare_suitability | Source code |
| print.ChromRes | Source code |
| print.InjecListObj | Source code |
| print.PlateObj | Source code |
| print_expr | Source code |
| process_chroms | Source code |
| quant_app | Man page Source code |
| quantapp_server | Source code |
| quantapp_ui | Source code |
| quantres_to_matrix | Source code |
| read_chrom | Man page Source code |
| read_compounds_config | Source code |
| read_experiment_results | Man page Source code |
| refresh_config | Source code |
| register_plate | Man page |
| register_plate,MultiPlate-method | Man page |
| register_plate,PlateObj-method | Man page |
| rel_deviation | Source code |
| remove_all_empty_row | Source code |
| remove_old_ui | Source code |
| rename_db_col | Source code |
| res_tab_server | Source code |
| res_ui | Source code |
| reset_config | Source code |
| response_factor | Source code |
| response_to_conc | Man page Source code |
| retrieve_dosing_db | Source code |
| retrieve_full_log_by_id | Source code |
| retrieve_full_study_log | Source code |
| retrieve_sample_log | Source code |
| retrieve_study | Source code |
| retrieve_subjects_db | Source code |
| reuse_plate | Source code |
| reverse_predict | Man page Source code |
| rmse | Source code |
| rse | Source code |
| rss | Source code |
| run_linearity_df | Source code |
| run_linearity_list | Source code |
| run_linearity_quantres | Source code |
| run_suitability | Source code |
| run_summary | Man page Source code |
| run_summary.PeakRes | Man page Source code |
| sample_ids_handler | Source code |
| samples_naming_style | Source code |
| save_compounds_config | Source code |
| save_experiment | Source code |
| set_observed_bounds | Source code |
| smooth_chrom | Man page Source code |
| str_to_vec | Source code |
| study_app | Man page |
| study_app_server | Source code |
| studydesign_ai | Source code |
| studydesign_db | Source code |
| suitability_ai | Source code |
| summary.InjecListObj | Source code |
| sync_linearity | Source code |
| undo_last_call | Source code |
| update_IS | Source code |
| update_IS_info | Source code |
| update_RT | Man page Source code |
| update_cmpd_info | Source code |
| update_config | Source code |
| update_dosing_db | Source code |
| update_expected_bounds | Source code |
| update_metadata | Source code |
| update_peak_area | Source code |
| update_peak_area_from_df | Source code |
| update_rel_response | Source code |
| update_sample_log | Source code |
| update_sample_quant | Source code |
| update_study | Source code |
| update_subjects_db | Source code |
| upload_quant_file_ui | Source code |
| write_injec_seq | Man page Source code |
