Files in PKbioanalysis
Pharmacokinetic Bioanalysis Experiments Design and Exploration
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/genAI.R
R/plate.R
R/method_file.R
R/config.R
R/PKbioanalysis-package.R
R/chrom_parsers.R
R/quant_parsers.R
R/quant_app.R
R/peak_integerate.R
R/gen_studydesign.R
R/plates_class.R
R/generate_test_set.R
R/plate_expr.R
R/dil_map.R
R/linearitycheck.R
R/quant_object.R
R/chrom_app.R
R/chrom_anomaly_plots.R
R/generics.R
R/samples_profiles.R
R/injec_list.R
R/zzz.R
R/chrom_utils.R
R/estim_residuals.R
R/calc.R
R/suitability_utils.R
R/quant_misc.R
R/chromatogram.R
R/process_chroms.R
R/study_app.R
R/class.R
R/utils.R
R/writers.R
inst/cmpds2.yaml
inst/test.qmd
inst/cmpds.yaml
inst/neu_method.yaml
inst/tests.R
inst/cmpds_MTG.yaml
inst/cmpdsx.xlsx
inst/extdata/08122019_MTG.txt
inst/extdata/sampleTargetLynx.xml
inst/extdata/config.yaml
inst/extdata/Samples.xlsx
inst/extdata/Oxycodone_Sarvish.txt
inst/extdata/GU_1.csv
inst/extdata/waters_mzML_ex_nodb/2024-04-15_CS1_1_NT_R6.mzML
inst/extdata/waters_mzML_ex_nodb/2024-04-15_CS5_20_NT_R10.mzML
inst/extdata/waters_mzML_ex_nodb/2024-04-15_DB_NT_R1.mzML
inst/extdata/waters_mzML_ex_nodb/2024-04-15_CS2_2_NT_R7.mzML
inst/extdata/waters_mzML_ex_nodb/2024-04-15_CS4_10_NT_R9.mzML
inst/extdata/waters_mzML_ex_nodb/2024-04-15_CS3_5_NT_R8.mzML
inst/extdata/waters_mzML_ex_nodb/2024-04-15_CS6_50_NT_R11.mzML
inst/extdata/waters_mzML_ex/2024-04-15_CS1_1_NT_R6.mzML
inst/extdata/waters_mzML_ex/2024-04-15_CS5_20_NT_R10.mzML
inst/extdata/waters_mzML_ex/2024-04-15_DB_NT_R1.mzML
inst/extdata/waters_mzML_ex/2024-04-15_CS2_2_NT_R7.mzML
inst/extdata/waters_mzML_ex/2024-04-15_CS4_10_NT_R9.mzML
inst/extdata/waters_mzML_ex/2024-04-15_CS3_5_NT_R8.mzML
inst/extdata/waters_mzML_ex/2024-04-15_CS6_50_NT_R11.mzML
inst/extdata/waters_raw_ex/2024-04-15_CS5_20_NT_R10.raw/_FUNC001.IDX
inst/extdata/waters_raw_ex/2024-04-15_CS5_20_NT_R10.raw/_HEADER.TXT
inst/extdata/waters_raw_ex/2024-04-15_CS5_20_NT_R10.raw/_FUNC001.DAT
inst/extdata/waters_raw_ex/2024-04-15_CS5_20_NT_R10.raw/_FUNC001.CMP
inst/extdata/waters_raw_ex/2024-04-15_CS5_20_NT_R10.raw/_FUNCTNS.INF
inst/extdata/waters_raw_ex/2024-04-15_CS5_20_NT_R10.raw/_FUNC001.STS
inst/extdata/waters_raw_ex/2024-04-15_CS5_20_NT_R10.raw/_FUNC001.EE
inst/extdata/waters_raw_ex/2024-04-15_CS5_20_NT_R10.raw/_INLET.INF
inst/extdata/waters_raw_ex/2024-04-15_CS5_20_NT_R10.raw/_extern.inf
inst/extdata/waters_raw_ex/2024-04-15_CS6_50_NT_R11.raw/_FUNC001.IDX
inst/extdata/waters_raw_ex/2024-04-15_CS6_50_NT_R11.raw/_HEADER.TXT
inst/extdata/waters_raw_ex/2024-04-15_CS6_50_NT_R11.raw/_FUNC001.DAT
inst/extdata/waters_raw_ex/2024-04-15_CS6_50_NT_R11.raw/_FUNC001.CMP
inst/extdata/waters_raw_ex/2024-04-15_CS6_50_NT_R11.raw/_FUNCTNS.INF
inst/extdata/waters_raw_ex/2024-04-15_CS6_50_NT_R11.raw/_FUNC001.STS
inst/extdata/waters_raw_ex/2024-04-15_CS6_50_NT_R11.raw/_FUNC001.EE
inst/extdata/waters_raw_ex/2024-04-15_CS6_50_NT_R11.raw/_INLET.INF
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inst/extdata/waters_raw_ex/2024-04-15_DB_NT_R1.raw/_FUNC001.IDX
inst/extdata/waters_raw_ex/2024-04-15_DB_NT_R1.raw/_HEADER.TXT
inst/extdata/waters_raw_ex/2024-04-15_DB_NT_R1.raw/_FUNC001.DAT
inst/extdata/waters_raw_ex/2024-04-15_DB_NT_R1.raw/_FUNC001.CMP
inst/extdata/waters_raw_ex/2024-04-15_DB_NT_R1.raw/_FUNCTNS.INF
inst/extdata/waters_raw_ex/2024-04-15_DB_NT_R1.raw/_FUNC001.STS
inst/extdata/waters_raw_ex/2024-04-15_DB_NT_R1.raw/_FUNC001.EE
inst/extdata/waters_raw_ex/2024-04-15_DB_NT_R1.raw/_INLET.INF
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inst/extdata/waters_raw_ex/2024-04-15_CS4_10_NT_R9.raw/_FUNC001.IDX
inst/extdata/waters_raw_ex/2024-04-15_CS4_10_NT_R9.raw/_HEADER.TXT
inst/extdata/waters_raw_ex/2024-04-15_CS4_10_NT_R9.raw/_FUNC001.DAT
inst/extdata/waters_raw_ex/2024-04-15_CS4_10_NT_R9.raw/_FUNC001.CMP
inst/extdata/waters_raw_ex/2024-04-15_CS4_10_NT_R9.raw/_FUNCTNS.INF
inst/extdata/waters_raw_ex/2024-04-15_CS4_10_NT_R9.raw/_FUNC001.STS
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inst/extdata/waters_raw_ex/2024-04-15_CS3_5_NT_R8.raw/_FUNC001.IDX
inst/extdata/waters_raw_ex/2024-04-15_CS3_5_NT_R8.raw/_HEADER.TXT
inst/extdata/waters_raw_ex/2024-04-15_CS3_5_NT_R8.raw/_FUNC001.DAT
inst/extdata/waters_raw_ex/2024-04-15_CS3_5_NT_R8.raw/_FUNC001.CMP
inst/extdata/waters_raw_ex/2024-04-15_CS3_5_NT_R8.raw/_FUNCTNS.INF
inst/extdata/waters_raw_ex/2024-04-15_CS3_5_NT_R8.raw/_FUNC001.STS
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inst/extdata/waters_raw_ex/2024-04-15_CS3_5_NT_R8.raw/_INLET.INF
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inst/extdata/waters_raw_ex/2024-04-15_CS2_2_NT_R7.raw/_FUNC001.IDX
inst/extdata/waters_raw_ex/2024-04-15_CS2_2_NT_R7.raw/_HEADER.TXT
inst/extdata/waters_raw_ex/2024-04-15_CS2_2_NT_R7.raw/_FUNC001.DAT
inst/extdata/waters_raw_ex/2024-04-15_CS2_2_NT_R7.raw/_FUNC001.CMP
inst/extdata/waters_raw_ex/2024-04-15_CS2_2_NT_R7.raw/_FUNCTNS.INF
inst/extdata/waters_raw_ex/2024-04-15_CS2_2_NT_R7.raw/_FUNC001.STS
inst/extdata/waters_raw_ex/2024-04-15_CS2_2_NT_R7.raw/_FUNC001.EE
inst/extdata/waters_raw_ex/2024-04-15_CS2_2_NT_R7.raw/_INLET.INF
inst/extdata/waters_raw_ex/2024-04-15_CS2_2_NT_R7.raw/_extern.inf
inst/extdata/waters_raw_ex/2024-04-15_CS1_1_NT_R6.raw/_FUNC001.IDX
inst/extdata/waters_raw_ex/2024-04-15_CS1_1_NT_R6.raw/_HEADER.TXT
inst/extdata/waters_raw_ex/2024-04-15_CS1_1_NT_R6.raw/_FUNC001.DAT
inst/extdata/waters_raw_ex/2024-04-15_CS1_1_NT_R6.raw/_FUNC001.CMP
inst/extdata/waters_raw_ex/2024-04-15_CS1_1_NT_R6.raw/_FUNCTNS.INF
inst/extdata/waters_raw_ex/2024-04-15_CS1_1_NT_R6.raw/_FUNC001.STS
inst/extdata/waters_raw_ex/2024-04-15_CS1_1_NT_R6.raw/_FUNC001.EE
inst/extdata/waters_raw_ex/2024-04-15_CS1_1_NT_R6.raw/_INLET.INF
inst/extdata/waters_raw_ex/2024-04-15_CS1_1_NT_R6.raw/_extern.inf
inst/pysrc/src/peak_integrate.py
inst/pysrc/src/pyzml.py
inst/pysrc/src/NN.py
inst/pysrc/src/masslynx_parser.py
inst/pysrc/src/__pycache__/peak_integrate.cpython-311.pyc
inst/pysrc/src/__pycache__/masslynx_parser.cpython-39.pyc
inst/pysrc/src/__pycache__/masslynx_parser.cpython-310.pyc
inst/pysrc/src/__pycache__/masslynx_parser.cpython-39-COP-3VVNKH2.pyc
inst/pysrc/src/__pycache__/peak_integerate.cpython-310.pyc
inst/pysrc/src/__pycache__/masslynx_parser.cpython-311.pyc
inst/pysrc/src/__pycache__/peak_integerate.cpython-311.pyc
inst/dist/install_PKbioanalysis.bat
inst/dist/quant_app.bat
inst/dist/install_PKbioanalysis.zip
inst/dist/study_app.bat
inst/dist/chrom_app.bat
tests/testthat.R
tests/exp/test-chrom_parsers.R
tests/exp/test-smoothing.R
tests/exp/test-process_chroms.R
tests/exp/test-chrom_res.R
tests/exp/test-filter_chrom.R
tests/exp/test-update_RT.R
tests/exp/test-peak_integerate.R
tests/testthat/test-dil_map.R
tests/testthat/test-plate_expr.R
tests/testthat/test-quant_misc.R
tests/testthat/test-studydesign.R
tests/testthat/test_linearity.R
tests/testthat/test-pydeps.R
tests/testthat/test-plate.R
tests/testthat/test-calculations.R
tests/testthat/test_quant_object.R
tests/testthat/helper-global.R
tests/testthat/test-injec_list.R
tests/testthat/test-apps.R
tests/testthat/test-estimresiduals.R
tests/testthat/test_methodsfile.R
tests/testthat/test-quant_parsers.R
tests/testthat/test-genai.R
tests/testthat/test_suitability.R
man/config_suitability.Rd
man/add_DB.Rd
man/run_summary.Rd
man/add_samples.Rd
man/combine_plates.Rd
man/generate_96.Rd
man/dot-child_to_df.Rd
man/integrate.Rd
man/cv.Rd
man/add_suitability.Rd
man/update_RT.Rd
man/has_default_RT.Rd
man/export_integration.Rd
man/combine_injec_lists.Rd
man/make_calibration_study.Rd
man/plot.PlateObj.Rd
man/register_plate-MultiPlate-method.Rd
man/fill_scheme.Rd
man/plot_var_pattern.Rd
man/response_to_conc.Rd
man/precision_per_vial.Rd
man/is_smoothed.Rd
man/read_chrom.Rd
man/quant_app.Rd
man/area_report.PeakRes.Rd
man/dot-parse_tlynx_csv.Rd
man/install_py_dep.Rd
man/sub-sub-MultiPlate-method.Rd
man/study_app.Rd
man/get_sample_names.Rd
man/build_injec_seq.Rd
man/dot-parse_tlynx_xml.Rd
man/is_integrated.Rd
man/fit_var.Rd
man/prefilter_precision_data.Rd
man/register_plate.Rd
man/add_QC.Rd
man/write_injec_seq.Rd
man/add_samples_db2.Rd
man/download_sample_list.Rd
man/register_plate-PlateObj-method.Rd
man/add_blank.Rd
man/clear_python_deps.Rd
man/add_cs_curve.Rd
man/check_chrom_cmpds.Rd
man/get_compound_ID.Rd
man/smooth_chrom.Rd
man/chrom_app.Rd
man/plot_RT.PeakRes.Rd
man/dot-filter_peak.Rd
man/plot_RT.ChromRes.Rd
man/plate_tree.Rd
man/calc_var_summary.Rd
man/create_new_study.Rd
man/plot_chrom.Rd
man/export_run.Rd
man/make_metabolic_study.Rd
man/extract_peak_bounds.Rd
man/formated_print.Rd
man/add_samples_db.Rd
man/reverse_predict.Rd
man/length-MultiPlate-method.Rd
man/dot-parse_cmpds.Rd
man/get_sample_ID.Rd
man/plot_peak_areas.PeakRes.Rd
man/plate_metadata.Rd
man/filter_chrom.Rd
man/read_experiment_results.Rd
man/estim_dil_limit.Rd
man/estim_lloq.Rd
man/PKbioanalysis-package.Rd
man/add_DQC.Rd
man/figures/logo.png
